Hb_006671_020

Information

Type -
Description -
Location Contig6671: 6064-6452
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO37595.1
description hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067D7R5
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0407181mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53288: 3518-5833
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006671_020 0.0 - - hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]
2 Hb_028071_010 0.1927030757 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
3 Hb_002950_090 0.233798607 - - -
4 Hb_000088_220 0.2414251435 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
5 Hb_000922_420 0.2643594247 - - glutaredoxin-1, grx1, putative [Ricinus communis]
6 Hb_005725_200 0.2645744941 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
7 Hb_000866_280 0.2665524176 - - PREDICTED: seven transmembrane domain-containing tyrosine-protein kinase 1-like [Jatropha curcas]
8 Hb_000975_240 0.2732635177 - - hypothetical protein JCGZ_22006 [Jatropha curcas]
9 Hb_010812_020 0.2738040455 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
10 Hb_032208_020 0.2753468076 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
11 Hb_004342_020 0.2794337033 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
12 Hb_011671_170 0.2832239304 - - PREDICTED: protein DYAD [Jatropha curcas]
13 Hb_002974_040 0.2850721779 - - GRF zinc finger containing protein [Medicago truncatula]
14 Hb_000260_800 0.2879664001 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Populus euphratica]
15 Hb_005511_170 0.2881085309 - - hypothetical protein CISIN_1g030718mg [Citrus sinensis]
16 Hb_001377_030 0.2906241826 - - PREDICTED: histone H3-like centromeric protein HTR12 [Jatropha curcas]
17 Hb_010080_010 0.2931859919 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
18 Hb_002631_320 0.2946033411 - - hypothetical protein JCGZ_22628 [Jatropha curcas]
19 Hb_001584_060 0.2955046294 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
20 Hb_032264_080 0.2994178409 - - PREDICTED: uncharacterized protein LOC105648216 [Jatropha curcas]

Gene co-expression network

sample Hb_006671_020 Hb_006671_020 Hb_028071_010 Hb_028071_010 Hb_006671_020--Hb_028071_010 Hb_002950_090 Hb_002950_090 Hb_006671_020--Hb_002950_090 Hb_000088_220 Hb_000088_220 Hb_006671_020--Hb_000088_220 Hb_000922_420 Hb_000922_420 Hb_006671_020--Hb_000922_420 Hb_005725_200 Hb_005725_200 Hb_006671_020--Hb_005725_200 Hb_000866_280 Hb_000866_280 Hb_006671_020--Hb_000866_280 Hb_028071_010--Hb_000922_420 Hb_004342_020 Hb_004342_020 Hb_028071_010--Hb_004342_020 Hb_002067_010 Hb_002067_010 Hb_028071_010--Hb_002067_010 Hb_000424_020 Hb_000424_020 Hb_028071_010--Hb_000424_020 Hb_013016_010 Hb_013016_010 Hb_028071_010--Hb_013016_010 Hb_000975_240 Hb_000975_240 Hb_002950_090--Hb_000975_240 Hb_002028_140 Hb_002028_140 Hb_002950_090--Hb_002028_140 Hb_000035_250 Hb_000035_250 Hb_002950_090--Hb_000035_250 Hb_010407_160 Hb_010407_160 Hb_002950_090--Hb_010407_160 Hb_011053_010 Hb_011053_010 Hb_002950_090--Hb_011053_010 Hb_002542_040 Hb_002542_040 Hb_002950_090--Hb_002542_040 Hb_032264_080 Hb_032264_080 Hb_000088_220--Hb_032264_080 Hb_000369_010 Hb_000369_010 Hb_000088_220--Hb_000369_010 Hb_000088_220--Hb_005725_200 Hb_000088_220--Hb_004342_020 Hb_000120_250 Hb_000120_250 Hb_000088_220--Hb_000120_250 Hb_000922_420--Hb_004342_020 Hb_002450_040 Hb_002450_040 Hb_000922_420--Hb_002450_040 Hb_006831_100 Hb_006831_100 Hb_000922_420--Hb_006831_100 Hb_003702_040 Hb_003702_040 Hb_000922_420--Hb_003702_040 Hb_000297_110 Hb_000297_110 Hb_000922_420--Hb_000297_110 Hb_000679_120 Hb_000679_120 Hb_005725_200--Hb_000679_120 Hb_000321_080 Hb_000321_080 Hb_005725_200--Hb_000321_080 Hb_001946_350 Hb_001946_350 Hb_005725_200--Hb_001946_350 Hb_032208_020 Hb_032208_020 Hb_005725_200--Hb_032208_020 Hb_044662_050 Hb_044662_050 Hb_005725_200--Hb_044662_050 Hb_000010_240 Hb_000010_240 Hb_000866_280--Hb_000010_240 Hb_003621_020 Hb_003621_020 Hb_000866_280--Hb_003621_020 Hb_000059_340 Hb_000059_340 Hb_000866_280--Hb_000059_340 Hb_000407_040 Hb_000407_040 Hb_000866_280--Hb_000407_040 Hb_001195_040 Hb_001195_040 Hb_000866_280--Hb_001195_040 Hb_004800_250 Hb_004800_250 Hb_000866_280--Hb_004800_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.560779 0.359302 2.8494 0 0.740621 0.180546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.440015 1.04162 0.477096 0.485591 0

CAGE analysis