Hb_003702_040

Information

Type -
Description -
Location Contig3702: 51784-55096
Sequence    

Annotation

kegg
ID rcu:RCOM_1014500
description hypothetical protein
nr
ID XP_012091745.1
description PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID A0A067JNJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21545 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38033: 51694-55190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003702_040 0.0 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
2 Hb_000001_110 0.1785451476 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000789_100 0.1803255563 - - PREDICTED: glucan endo-1,3-beta-glucosidase 13-like [Jatropha curcas]
4 Hb_000933_150 0.1833357908 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
5 Hb_000676_050 0.1919894908 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
6 Hb_000003_650 0.1967050231 - - malic enzyme, putative [Ricinus communis]
7 Hb_006096_040 0.1975802857 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
8 Hb_004970_200 0.1982921199 - - serine/threonine-protein kinase, putative [Ricinus communis]
9 Hb_000297_110 0.1997988453 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
10 Hb_010968_010 0.2040110678 - - Golgi snare 12 isoform 1 [Theobroma cacao]
11 Hb_000733_070 0.2059597439 - - PREDICTED: rop guanine nucleotide exchange factor 5 [Jatropha curcas]
12 Hb_001484_060 0.2085027224 - - PREDICTED: uncharacterized protein LOC105641630 [Jatropha curcas]
13 Hb_000042_210 0.2108908527 - - PREDICTED: uncharacterized protein LOC105632808 [Jatropha curcas]
14 Hb_002450_040 0.2110111428 - - PREDICTED: DNA-directed RNA polymerases II and V subunit 6B [Vitis vinifera]
15 Hb_000307_170 0.2142197827 - - PREDICTED: uncharacterized protein LOC105638528 [Jatropha curcas]
16 Hb_073973_170 0.2147687536 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
17 Hb_000189_310 0.2149117181 - - PREDICTED: serine/threonine-protein kinase Nek1 isoform X1 [Jatropha curcas]
18 Hb_024505_020 0.2151511913 - - PREDICTED: probable receptor-like protein kinase At1g80640 [Jatropha curcas]
19 Hb_000327_210 0.2153962763 - - -
20 Hb_004046_040 0.2169791952 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_003702_040 Hb_003702_040 Hb_000001_110 Hb_000001_110 Hb_003702_040--Hb_000001_110 Hb_000789_100 Hb_000789_100 Hb_003702_040--Hb_000789_100 Hb_000933_150 Hb_000933_150 Hb_003702_040--Hb_000933_150 Hb_000676_050 Hb_000676_050 Hb_003702_040--Hb_000676_050 Hb_000003_650 Hb_000003_650 Hb_003702_040--Hb_000003_650 Hb_006096_040 Hb_006096_040 Hb_003702_040--Hb_006096_040 Hb_000270_840 Hb_000270_840 Hb_000001_110--Hb_000270_840 Hb_000933_050 Hb_000933_050 Hb_000001_110--Hb_000933_050 Hb_000538_020 Hb_000538_020 Hb_000001_110--Hb_000538_020 Hb_001405_050 Hb_001405_050 Hb_000001_110--Hb_001405_050 Hb_005529_010 Hb_005529_010 Hb_000001_110--Hb_005529_010 Hb_000666_110 Hb_000666_110 Hb_000001_110--Hb_000666_110 Hb_000297_110 Hb_000297_110 Hb_000789_100--Hb_000297_110 Hb_010968_010 Hb_010968_010 Hb_000789_100--Hb_010968_010 Hb_000920_280 Hb_000920_280 Hb_000789_100--Hb_000920_280 Hb_001484_060 Hb_001484_060 Hb_000789_100--Hb_001484_060 Hb_000789_100--Hb_000676_050 Hb_000482_110 Hb_000482_110 Hb_000789_100--Hb_000482_110 Hb_008887_050 Hb_008887_050 Hb_000933_150--Hb_008887_050 Hb_000933_150--Hb_000676_050 Hb_000933_150--Hb_006096_040 Hb_000933_150--Hb_001484_060 Hb_000933_150--Hb_010968_010 Hb_031527_100 Hb_031527_100 Hb_000933_150--Hb_031527_100 Hb_000676_050--Hb_010968_010 Hb_002784_050 Hb_002784_050 Hb_000676_050--Hb_002784_050 Hb_000676_050--Hb_008887_050 Hb_002639_150 Hb_002639_150 Hb_000676_050--Hb_002639_150 Hb_000205_120 Hb_000205_120 Hb_000676_050--Hb_000205_120 Hb_000065_070 Hb_000065_070 Hb_000003_650--Hb_000065_070 Hb_000172_120 Hb_000172_120 Hb_000003_650--Hb_000172_120 Hb_001269_150 Hb_001269_150 Hb_000003_650--Hb_001269_150 Hb_007441_340 Hb_007441_340 Hb_000003_650--Hb_007441_340 Hb_000563_210 Hb_000563_210 Hb_000003_650--Hb_000563_210 Hb_002400_220 Hb_002400_220 Hb_000003_650--Hb_002400_220 Hb_004046_040 Hb_004046_040 Hb_006096_040--Hb_004046_040 Hb_006096_040--Hb_000676_050 Hb_002687_140 Hb_002687_140 Hb_006096_040--Hb_002687_140 Hb_006096_040--Hb_000482_110 Hb_000331_290 Hb_000331_290 Hb_006096_040--Hb_000331_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3603 1.65939 24.6724 3.81724 29.4595 13.4552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7168 9.78429 9.88086 0.618331 0.66377

CAGE analysis