Hb_000065_070

Information

Type -
Description -
Location Contig65: 216074-217088
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO73065.1
description hypothetical protein CISIN_1g039077mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067G3T3
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039077mg PE=4 SV=1
Gene Ontology
ID GO:0016491
description omega-6 fatty acid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000065_070 0.0 - - hypothetical protein CISIN_1g039077mg [Citrus sinensis]
2 Hb_000003_650 0.1113562238 - - malic enzyme, putative [Ricinus communis]
3 Hb_000138_190 0.1535686686 - - omega-6 fatty acid desaturase [Hevea brasiliensis]
4 Hb_017098_030 0.1581790016 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
5 Hb_005739_010 0.1582990138 - - hypothetical protein JCGZ_04016 [Jatropha curcas]
6 Hb_002900_140 0.1631338718 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
7 Hb_031042_040 0.1638003439 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
8 Hb_001269_150 0.1655528187 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
9 Hb_003376_100 0.1665526899 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
10 Hb_000138_010 0.1682078906 - - hypothetical protein RCOM_0504460 [Ricinus communis]
11 Hb_002377_040 0.1683649259 - - serine/threonine protein kinase, putative [Ricinus communis]
12 Hb_094437_070 0.1705678075 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
13 Hb_002851_060 0.1705823985 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
14 Hb_011537_040 0.1706596151 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
15 Hb_000028_050 0.1714104553 - - aldose-1-epimerase, putative [Ricinus communis]
16 Hb_000359_170 0.1718346919 - - hypothetical protein CISIN_1g014750mg [Citrus sinensis]
17 Hb_002759_250 0.1731183633 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
18 Hb_000997_260 0.1735479379 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
19 Hb_003050_040 0.1741652287 desease resistance Gene Name: AAA Katanin p60 ATPase-containing subunit, putative [Ricinus communis]
20 Hb_000500_290 0.1741925122 - - bromodomain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000065_070 Hb_000065_070 Hb_000003_650 Hb_000003_650 Hb_000065_070--Hb_000003_650 Hb_000138_190 Hb_000138_190 Hb_000065_070--Hb_000138_190 Hb_017098_030 Hb_017098_030 Hb_000065_070--Hb_017098_030 Hb_005739_010 Hb_005739_010 Hb_000065_070--Hb_005739_010 Hb_002900_140 Hb_002900_140 Hb_000065_070--Hb_002900_140 Hb_031042_040 Hb_031042_040 Hb_000065_070--Hb_031042_040 Hb_000172_120 Hb_000172_120 Hb_000003_650--Hb_000172_120 Hb_001269_150 Hb_001269_150 Hb_000003_650--Hb_001269_150 Hb_007441_340 Hb_007441_340 Hb_000003_650--Hb_007441_340 Hb_000563_210 Hb_000563_210 Hb_000003_650--Hb_000563_210 Hb_002400_220 Hb_002400_220 Hb_000003_650--Hb_002400_220 Hb_002025_230 Hb_002025_230 Hb_000138_190--Hb_002025_230 Hb_007741_170 Hb_007741_170 Hb_000138_190--Hb_007741_170 Hb_005298_060 Hb_005298_060 Hb_000138_190--Hb_005298_060 Hb_000138_190--Hb_031042_040 Hb_001195_110 Hb_001195_110 Hb_000138_190--Hb_001195_110 Hb_003636_090 Hb_003636_090 Hb_000138_190--Hb_003636_090 Hb_004374_010 Hb_004374_010 Hb_017098_030--Hb_004374_010 Hb_003055_050 Hb_003055_050 Hb_017098_030--Hb_003055_050 Hb_001437_300 Hb_001437_300 Hb_017098_030--Hb_001437_300 Hb_006261_040 Hb_006261_040 Hb_017098_030--Hb_006261_040 Hb_002851_060 Hb_002851_060 Hb_017098_030--Hb_002851_060 Hb_004502_030 Hb_004502_030 Hb_017098_030--Hb_004502_030 Hb_002716_150 Hb_002716_150 Hb_005739_010--Hb_002716_150 Hb_005739_010--Hb_031042_040 Hb_005739_010--Hb_002900_140 Hb_135810_010 Hb_135810_010 Hb_005739_010--Hb_135810_010 Hb_000630_040 Hb_000630_040 Hb_005739_010--Hb_000630_040 Hb_029921_010 Hb_029921_010 Hb_002900_140--Hb_029921_010 Hb_005892_060 Hb_005892_060 Hb_002900_140--Hb_005892_060 Hb_000997_270 Hb_000997_270 Hb_002900_140--Hb_000997_270 Hb_002900_140--Hb_000630_040 Hb_002955_030 Hb_002955_030 Hb_031042_040--Hb_002955_030 Hb_010174_130 Hb_010174_130 Hb_031042_040--Hb_010174_130 Hb_002377_040 Hb_002377_040 Hb_031042_040--Hb_002377_040 Hb_031042_040--Hb_002716_150 Hb_000085_340 Hb_000085_340 Hb_031042_040--Hb_000085_340 Hb_000034_140 Hb_000034_140 Hb_031042_040--Hb_000034_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72017 0.163812 0.516257 0.0794182 1.13401 1.67891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94939 0.328156 0.553345 0.0911419 0.20346

CAGE analysis