Hb_002900_140

Information

Type -
Description -
Location Contig2900: 181639-183488
Sequence    

Annotation

kegg
ID rcu:RCOM_0498280
description hypothetical protein
nr
ID XP_012091121.1
description PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9SWN7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0498280 PE=4 SV=1
Gene Ontology
ID GO:0016757
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002900_140 0.0 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
2 Hb_029921_010 0.104463689 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
3 Hb_005739_010 0.1538551261 - - hypothetical protein JCGZ_04016 [Jatropha curcas]
4 Hb_000065_070 0.1631338718 - - hypothetical protein CISIN_1g039077mg [Citrus sinensis]
5 Hb_005892_060 0.167052944 - - PREDICTED: uncharacterized protein LOC105632176 isoform X2 [Jatropha curcas]
6 Hb_000997_270 0.1719964265 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
7 Hb_000630_040 0.1762872285 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
8 Hb_001002_040 0.1834419843 - - PREDICTED: ATP-citrate synthase beta chain protein 2 [Gossypium raimondii]
9 Hb_005271_170 0.1843972238 - - PREDICTED: tetraspanin-10 isoform X3 [Vitis vinifera]
10 Hb_068804_150 0.1882536222 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000003_650 0.1902981376 - - malic enzyme, putative [Ricinus communis]
12 Hb_003376_100 0.1952660562 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
13 Hb_001105_190 0.1962671785 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
14 Hb_001329_230 0.1984370739 - - PREDICTED: peptide chain release factor 1-like, mitochondrial [Jatropha curcas]
15 Hb_003453_010 0.1994355999 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000982_110 0.1995875766 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
17 Hb_002226_030 0.1999945016 - - PREDICTED: high affinity nitrate transporter 2.7 [Jatropha curcas]
18 Hb_002301_280 0.2004762389 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
19 Hb_002054_010 0.2005689973 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
20 Hb_017098_030 0.2044909904 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]

Gene co-expression network

sample Hb_002900_140 Hb_002900_140 Hb_029921_010 Hb_029921_010 Hb_002900_140--Hb_029921_010 Hb_005739_010 Hb_005739_010 Hb_002900_140--Hb_005739_010 Hb_000065_070 Hb_000065_070 Hb_002900_140--Hb_000065_070 Hb_005892_060 Hb_005892_060 Hb_002900_140--Hb_005892_060 Hb_000997_270 Hb_000997_270 Hb_002900_140--Hb_000997_270 Hb_000630_040 Hb_000630_040 Hb_002900_140--Hb_000630_040 Hb_068804_150 Hb_068804_150 Hb_029921_010--Hb_068804_150 Hb_000982_110 Hb_000982_110 Hb_029921_010--Hb_000982_110 Hb_029921_010--Hb_000997_270 Hb_001005_090 Hb_001005_090 Hb_029921_010--Hb_001005_090 Hb_029921_010--Hb_005892_060 Hb_002716_150 Hb_002716_150 Hb_005739_010--Hb_002716_150 Hb_031042_040 Hb_031042_040 Hb_005739_010--Hb_031042_040 Hb_135810_010 Hb_135810_010 Hb_005739_010--Hb_135810_010 Hb_005739_010--Hb_000065_070 Hb_005739_010--Hb_000630_040 Hb_000003_650 Hb_000003_650 Hb_000065_070--Hb_000003_650 Hb_000138_190 Hb_000138_190 Hb_000065_070--Hb_000138_190 Hb_017098_030 Hb_017098_030 Hb_000065_070--Hb_017098_030 Hb_000065_070--Hb_031042_040 Hb_000699_110 Hb_000699_110 Hb_005892_060--Hb_000699_110 Hb_002226_030 Hb_002226_030 Hb_005892_060--Hb_002226_030 Hb_002301_290 Hb_002301_290 Hb_005892_060--Hb_002301_290 Hb_074197_010 Hb_074197_010 Hb_005892_060--Hb_074197_010 Hb_005892_060--Hb_000997_270 Hb_000997_270--Hb_002226_030 Hb_005829_010 Hb_005829_010 Hb_000997_270--Hb_005829_010 Hb_003376_100 Hb_003376_100 Hb_000997_270--Hb_003376_100 Hb_001616_080 Hb_001616_080 Hb_000997_270--Hb_001616_080 Hb_002284_090 Hb_002284_090 Hb_000997_270--Hb_002284_090 Hb_000127_010 Hb_000127_010 Hb_000997_270--Hb_000127_010 Hb_002054_010 Hb_002054_010 Hb_000630_040--Hb_002054_010 Hb_000630_070 Hb_000630_070 Hb_000630_040--Hb_000630_070 Hb_101832_010 Hb_101832_010 Hb_000630_040--Hb_101832_010 Hb_000316_050 Hb_000316_050 Hb_000630_040--Hb_000316_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.554717 0.0406056 0.124366 0.0745379 0.2641 0.682294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.893509 0.175721 0.109348 0.0351509 0.243379

CAGE analysis