Hb_002054_010

Information

Type -
Description -
Location Contig2054: 14092-17736
Sequence    

Annotation

kegg
ID tcc:TCM_038166
description Heptahelical transmembrane protein1 isoform 1
nr
ID XP_012081179.1
description PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
swissprot
ID Q93ZH9
description Heptahelical transmembrane protein 1 OS=Arabidopsis thaliana GN=HHP1 PE=1 SV=1
trembl
ID A0A067KEJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17021 PE=4 SV=1
Gene Ontology
ID GO:0016021
description heptahelical transmembrane protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21191: 14504-15432 , PASA_asmbl_21192: 14563-17630
cDNA
(Sanger)
(ID:Location)		 010_J07.ab1: 14504-15252

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002054_010 0.0 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
2 Hb_000331_440 0.1162695257 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
3 Hb_001053_180 0.1202412704 - - protein binding protein, putative [Ricinus communis]
4 Hb_000316_050 0.1302471724 - - enoyl-ACP reductase [Vernicia fordii]
5 Hb_000096_090 0.1334142017 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
6 Hb_000630_040 0.1403522135 transcription factor TF Family: bZIP PREDICTED: protein ABSCISIC ACID-INSENSITIVE 5 [Jatropha curcas]
7 Hb_101832_010 0.1412605395 - - nitrate transporter, putative [Ricinus communis]
8 Hb_117134_010 0.1481828006 - - PREDICTED: 14 kDa zinc-binding protein isoform X1 [Jatropha curcas]
9 Hb_000630_070 0.1499984625 - - PREDICTED: cell division protein FtsZ homolog 2-1, chloroplastic [Jatropha curcas]
10 Hb_002119_120 0.1537726887 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
11 Hb_092100_020 0.1545182181 - - strictosidine synthase, putative [Ricinus communis]
12 Hb_003336_030 0.1563249706 - - transcription factor, putative [Ricinus communis]
13 Hb_000345_390 0.1567760069 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
14 Hb_002226_030 0.1607924481 - - PREDICTED: high affinity nitrate transporter 2.7 [Jatropha curcas]
15 Hb_001141_380 0.1619667253 - - hypothetical protein PRUPE_ppa012823mg [Prunus persica]
16 Hb_001437_220 0.1644065175 - - Transmembrane protein, putative [Ricinus communis]
17 Hb_012338_010 0.1649275336 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004738_010 0.1654175544 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
19 Hb_000505_010 0.1679154953 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
20 Hb_138585_050 0.1684096728 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]

Gene co-expression network

sample Hb_002054_010 Hb_002054_010 Hb_000331_440 Hb_000331_440 Hb_002054_010--Hb_000331_440 Hb_001053_180 Hb_001053_180 Hb_002054_010--Hb_001053_180 Hb_000316_050 Hb_000316_050 Hb_002054_010--Hb_000316_050 Hb_000096_090 Hb_000096_090 Hb_002054_010--Hb_000096_090 Hb_000630_040 Hb_000630_040 Hb_002054_010--Hb_000630_040 Hb_101832_010 Hb_101832_010 Hb_002054_010--Hb_101832_010 Hb_000331_440--Hb_001053_180 Hb_001828_080 Hb_001828_080 Hb_000331_440--Hb_001828_080 Hb_001439_170 Hb_001439_170 Hb_000331_440--Hb_001439_170 Hb_000735_130 Hb_000735_130 Hb_000331_440--Hb_000735_130 Hb_003777_180 Hb_003777_180 Hb_000331_440--Hb_003777_180 Hb_024682_010 Hb_024682_010 Hb_001053_180--Hb_024682_010 Hb_001053_180--Hb_000096_090 Hb_000127_010 Hb_000127_010 Hb_001053_180--Hb_000127_010 Hb_001031_080 Hb_001031_080 Hb_001053_180--Hb_001031_080 Hb_000345_390 Hb_000345_390 Hb_001053_180--Hb_000345_390 Hb_116349_100 Hb_116349_100 Hb_001053_180--Hb_116349_100 Hb_000316_050--Hb_000096_090 Hb_000236_070 Hb_000236_070 Hb_000316_050--Hb_000236_070 Hb_001959_070 Hb_001959_070 Hb_000316_050--Hb_001959_070 Hb_000648_110 Hb_000648_110 Hb_000316_050--Hb_000648_110 Hb_000505_010 Hb_000505_010 Hb_000316_050--Hb_000505_010 Hb_000023_140 Hb_000023_140 Hb_000316_050--Hb_000023_140 Hb_003376_040 Hb_003376_040 Hb_000096_090--Hb_003376_040 Hb_001396_180 Hb_001396_180 Hb_000096_090--Hb_001396_180 Hb_000096_090--Hb_000648_110 Hb_003732_020 Hb_003732_020 Hb_000096_090--Hb_003732_020 Hb_000630_070 Hb_000630_070 Hb_000630_040--Hb_000630_070 Hb_005739_010 Hb_005739_010 Hb_000630_040--Hb_005739_010 Hb_000630_040--Hb_101832_010 Hb_000630_040--Hb_000316_050 Hb_002900_140 Hb_002900_140 Hb_000630_040--Hb_002900_140 Hb_002226_030 Hb_002226_030 Hb_101832_010--Hb_002226_030 Hb_101832_010--Hb_000345_390 Hb_101832_010--Hb_116349_100 Hb_101832_010--Hb_001053_180 Hb_101832_010--Hb_000630_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.2371 0.92935 7.24957 10.607 20.5476 32.5193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.7816 26.5351 31.4562 4.1249 22.275

CAGE analysis