Hb_000331_440

Information

Type -
Description -
Location Contig331: 359374-365629
Sequence    

Annotation

kegg
ID pop:POPTR_0015s10290g
description POPTRDRAFT_252534; hypothetical protein
nr
ID XP_002321677.2
description hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
swissprot
ID Q5ZMT7
description Uncharacterized aarF domain-containing protein kinase 1 OS=Gallus gallus GN=ADCK1 PE=2 SV=1
trembl
ID B9IF59
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s10290g PE=4 SV=2
Gene Ontology
ID GO:0004672
description uncharacterized aarf domain-containing protein kinase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34801: 359462-365101 , PASA_asmbl_34802: 359462-365101
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_440 0.0 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
2 Hb_001053_180 0.1101303227 - - protein binding protein, putative [Ricinus communis]
3 Hb_001828_080 0.1162562087 - - glyceraldehyde 3-phosphate dehydrogenase family protein [Populus trichocarpa]
4 Hb_002054_010 0.1162695257 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
5 Hb_001439_170 0.1273407893 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
6 Hb_000735_130 0.1273758362 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003777_180 0.1284948931 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
8 Hb_001711_030 0.128695135 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
9 Hb_000096_090 0.1300259023 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
10 Hb_002119_120 0.130672517 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
11 Hb_004116_080 0.1309206669 - - ATATH9, putative [Ricinus communis]
12 Hb_000127_010 0.1315092288 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
13 Hb_000487_310 0.1337866707 - - PREDICTED: uncharacterized protein LOC105646211 isoform X1 [Jatropha curcas]
14 Hb_004738_010 0.1341440541 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
15 Hb_002749_100 0.1373771701 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
16 Hb_002447_030 0.1406204456 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
17 Hb_001863_480 0.1407014902 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
18 Hb_000041_080 0.1408851116 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
19 Hb_024650_020 0.1422388088 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
20 Hb_001437_220 0.1422474003 - - Transmembrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000331_440 Hb_000331_440 Hb_001053_180 Hb_001053_180 Hb_000331_440--Hb_001053_180 Hb_001828_080 Hb_001828_080 Hb_000331_440--Hb_001828_080 Hb_002054_010 Hb_002054_010 Hb_000331_440--Hb_002054_010 Hb_001439_170 Hb_001439_170 Hb_000331_440--Hb_001439_170 Hb_000735_130 Hb_000735_130 Hb_000331_440--Hb_000735_130 Hb_003777_180 Hb_003777_180 Hb_000331_440--Hb_003777_180 Hb_024682_010 Hb_024682_010 Hb_001053_180--Hb_024682_010 Hb_000096_090 Hb_000096_090 Hb_001053_180--Hb_000096_090 Hb_000127_010 Hb_000127_010 Hb_001053_180--Hb_000127_010 Hb_001031_080 Hb_001031_080 Hb_001053_180--Hb_001031_080 Hb_000345_390 Hb_000345_390 Hb_001053_180--Hb_000345_390 Hb_116349_100 Hb_116349_100 Hb_001053_180--Hb_116349_100 Hb_001828_080--Hb_001439_170 Hb_000012_130 Hb_000012_130 Hb_001828_080--Hb_000012_130 Hb_004738_010 Hb_004738_010 Hb_001828_080--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_001828_080--Hb_002119_120 Hb_001828_080--Hb_000735_130 Hb_002054_010--Hb_001053_180 Hb_000316_050 Hb_000316_050 Hb_002054_010--Hb_000316_050 Hb_002054_010--Hb_000096_090 Hb_000630_040 Hb_000630_040 Hb_002054_010--Hb_000630_040 Hb_101832_010 Hb_101832_010 Hb_002054_010--Hb_101832_010 Hb_001439_170--Hb_000012_130 Hb_001711_030 Hb_001711_030 Hb_001439_170--Hb_001711_030 Hb_001863_480 Hb_001863_480 Hb_001439_170--Hb_001863_480 Hb_001439_170--Hb_002119_120 Hb_044662_070 Hb_044662_070 Hb_001439_170--Hb_044662_070 Hb_002539_080 Hb_002539_080 Hb_001439_170--Hb_002539_080 Hb_000062_340 Hb_000062_340 Hb_000735_130--Hb_000062_340 Hb_012505_010 Hb_012505_010 Hb_000735_130--Hb_012505_010 Hb_001277_070 Hb_001277_070 Hb_000735_130--Hb_001277_070 Hb_000735_130--Hb_044662_070 Hb_003376_120 Hb_003376_120 Hb_000735_130--Hb_003376_120 Hb_004048_110 Hb_004048_110 Hb_000735_130--Hb_004048_110 Hb_000481_020 Hb_000481_020 Hb_003777_180--Hb_000481_020 Hb_000329_040 Hb_000329_040 Hb_003777_180--Hb_000329_040 Hb_000412_110 Hb_000412_110 Hb_003777_180--Hb_000412_110 Hb_002681_020 Hb_002681_020 Hb_003777_180--Hb_002681_020 Hb_000676_220 Hb_000676_220 Hb_003777_180--Hb_000676_220 Hb_006569_020 Hb_006569_020 Hb_003777_180--Hb_006569_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.4532 1.25396 12.2827 8.33385 14.7979 24.3731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.1323 33.5666 32.1062 3.46937 10.9066

CAGE analysis