Hb_002067_010

Information

Type -
Description -
Location Contig2067: 4610-5358
Sequence    

Annotation

kegg
ID rcu:RCOM_0211540
description hypothetical protein
nr
ID XP_002533351.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T532
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0211540 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21285: 4625-5074
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002067_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001507_080 0.1815744134 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
3 Hb_074792_010 0.1936607041 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
4 Hb_003430_040 0.1956510304 - - spermidine synthase 1, putative [Ricinus communis]
5 Hb_003874_010 0.2006276523 transcription factor TF Family: B3 transcription factor, putative [Ricinus communis]
6 Hb_004342_020 0.20706779 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
7 Hb_010080_010 0.2097647115 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
8 Hb_004449_140 0.21170647 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
9 Hb_001252_240 0.211853783 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
10 Hb_003938_170 0.2222338427 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
11 Hb_001214_190 0.2232643713 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
12 Hb_000816_210 0.2236863765 - - PREDICTED: uroporphyrinogen decarboxylase isoform X2 [Jatropha curcas]
13 Hb_007336_050 0.2255241068 - - PREDICTED: uncharacterized protein LOC105630915 [Jatropha curcas]
14 Hb_010998_050 0.2271671688 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
15 Hb_003038_250 0.2308321995 - - PREDICTED: uncharacterized protein LOC105650395 [Jatropha curcas]
16 Hb_000365_170 0.2311128824 - - PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]
17 Hb_019715_010 0.2330888193 - - carbon catabolite repressor protein, putative [Ricinus communis]
18 Hb_000975_240 0.2337665282 - - hypothetical protein JCGZ_22006 [Jatropha curcas]
19 Hb_006555_040 0.23404304 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
20 Hb_000732_030 0.2341120503 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002067_010 Hb_002067_010 Hb_001507_080 Hb_001507_080 Hb_002067_010--Hb_001507_080 Hb_074792_010 Hb_074792_010 Hb_002067_010--Hb_074792_010 Hb_003430_040 Hb_003430_040 Hb_002067_010--Hb_003430_040 Hb_003874_010 Hb_003874_010 Hb_002067_010--Hb_003874_010 Hb_004342_020 Hb_004342_020 Hb_002067_010--Hb_004342_020 Hb_010080_010 Hb_010080_010 Hb_002067_010--Hb_010080_010 Hb_010998_050 Hb_010998_050 Hb_001507_080--Hb_010998_050 Hb_036790_030 Hb_036790_030 Hb_001507_080--Hb_036790_030 Hb_000345_130 Hb_000345_130 Hb_001507_080--Hb_000345_130 Hb_000349_230 Hb_000349_230 Hb_001507_080--Hb_000349_230 Hb_000345_410 Hb_000345_410 Hb_001507_080--Hb_000345_410 Hb_074792_010--Hb_003430_040 Hb_000300_710 Hb_000300_710 Hb_074792_010--Hb_000300_710 Hb_000347_140 Hb_000347_140 Hb_074792_010--Hb_000347_140 Hb_000732_030 Hb_000732_030 Hb_074792_010--Hb_000732_030 Hb_000638_260 Hb_000638_260 Hb_074792_010--Hb_000638_260 Hb_074792_010--Hb_003874_010 Hb_003430_040--Hb_000347_140 Hb_003430_040--Hb_003874_010 Hb_003430_040--Hb_000732_030 Hb_000032_200 Hb_000032_200 Hb_003430_040--Hb_000032_200 Hb_003430_040--Hb_000300_710 Hb_000392_450 Hb_000392_450 Hb_003874_010--Hb_000392_450 Hb_002027_320 Hb_002027_320 Hb_003874_010--Hb_002027_320 Hb_007263_010 Hb_007263_010 Hb_003874_010--Hb_007263_010 Hb_004517_030 Hb_004517_030 Hb_003874_010--Hb_004517_030 Hb_003874_010--Hb_000300_710 Hb_019715_010 Hb_019715_010 Hb_004342_020--Hb_019715_010 Hb_001277_280 Hb_001277_280 Hb_004342_020--Hb_001277_280 Hb_001377_030 Hb_001377_030 Hb_004342_020--Hb_001377_030 Hb_002450_040 Hb_002450_040 Hb_004342_020--Hb_002450_040 Hb_011249_030 Hb_011249_030 Hb_004342_020--Hb_011249_030 Hb_026549_020 Hb_026549_020 Hb_004342_020--Hb_026549_020 Hb_000120_250 Hb_000120_250 Hb_010080_010--Hb_000120_250 Hb_100790_010 Hb_100790_010 Hb_010080_010--Hb_100790_010 Hb_000975_240 Hb_000975_240 Hb_010080_010--Hb_000975_240 Hb_011386_050 Hb_011386_050 Hb_010080_010--Hb_011386_050 Hb_010080_010--Hb_001277_280 Hb_000340_130 Hb_000340_130 Hb_010080_010--Hb_000340_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.348494 0.136678 2.07682 0.150115 0.26057 0.242807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.267145 0.139992 0.371636 0.0571407 0.137211

CAGE analysis