Hb_019715_010

Information

Type -
Description -
Location Contig19715: 251-4346
Sequence    

Annotation

kegg
ID rcu:RCOM_1341420
description carbon catabolite repressor protein, putative
nr
ID XP_002515120.1
description carbon catabolite repressor protein, putative [Ricinus communis]
swissprot
ID O81916
description Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana GN=At1g02270 PE=2 SV=2
trembl
ID B9RMY1
description Carbon catabolite repressor protein, putative OS=Ricinus communis GN=RCOM_1341420 PE=4 SV=1
Gene Ontology
ID GO:0005634
description uncharacterized calcium-binding protein at1g02270-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19805: 277-4347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019715_010 0.0 - - carbon catabolite repressor protein, putative [Ricinus communis]
2 Hb_011249_030 0.127227215 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
3 Hb_001277_280 0.1312239671 - - PREDICTED: protein argonaute 10 [Jatropha curcas]
4 Hb_005463_130 0.1342797136 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
5 Hb_004342_020 0.1380352305 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
6 Hb_000287_050 0.1403737782 - - PREDICTED: uncharacterized protein LOC105637398 [Jatropha curcas]
7 Hb_000012_270 0.1410482347 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
8 Hb_012586_050 0.1444052 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
9 Hb_002232_190 0.1463910501 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002054_050 0.1473653296 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
11 Hb_001486_170 0.1490576252 - - PREDICTED: syntaxin-132 [Jatropha curcas]
12 Hb_000959_220 0.1509021608 - - zinc finger protein, putative [Ricinus communis]
13 Hb_171900_040 0.1533692004 - - PREDICTED: probable mitochondrial import inner membrane translocase subunit TIM21 [Jatropha curcas]
14 Hb_008921_010 0.1543964671 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
15 Hb_000959_230 0.1559019989 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
16 Hb_000019_150 0.1576930951 - - PREDICTED: uncharacterized protein LOC105630208 [Jatropha curcas]
17 Hb_002498_140 0.1591877915 - - PREDICTED: peroxisomal membrane protein PMP22-like isoform X1 [Solanum lycopersicum]
18 Hb_044662_060 0.159803684 - - PREDICTED: long chain acyl-CoA synthetase 9, chloroplastic [Jatropha curcas]
19 Hb_039605_010 0.1619107865 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
20 Hb_143766_020 0.1621974319 - - putative phospholipase A2 [Gossypium arboreum]

Gene co-expression network

sample Hb_019715_010 Hb_019715_010 Hb_011249_030 Hb_011249_030 Hb_019715_010--Hb_011249_030 Hb_001277_280 Hb_001277_280 Hb_019715_010--Hb_001277_280 Hb_005463_130 Hb_005463_130 Hb_019715_010--Hb_005463_130 Hb_004342_020 Hb_004342_020 Hb_019715_010--Hb_004342_020 Hb_000287_050 Hb_000287_050 Hb_019715_010--Hb_000287_050 Hb_000012_270 Hb_000012_270 Hb_019715_010--Hb_000012_270 Hb_011249_030--Hb_000287_050 Hb_039605_010 Hb_039605_010 Hb_011249_030--Hb_039605_010 Hb_011249_030--Hb_001277_280 Hb_004128_200 Hb_004128_200 Hb_011249_030--Hb_004128_200 Hb_029142_030 Hb_029142_030 Hb_011249_030--Hb_029142_030 Hb_065755_030 Hb_065755_030 Hb_011249_030--Hb_065755_030 Hb_006816_100 Hb_006816_100 Hb_001277_280--Hb_006816_100 Hb_001277_280--Hb_004128_200 Hb_000959_220 Hb_000959_220 Hb_001277_280--Hb_000959_220 Hb_001517_050 Hb_001517_050 Hb_001277_280--Hb_001517_050 Hb_001005_020 Hb_001005_020 Hb_001277_280--Hb_001005_020 Hb_001486_170 Hb_001486_170 Hb_005463_130--Hb_001486_170 Hb_002054_050 Hb_002054_050 Hb_005463_130--Hb_002054_050 Hb_001501_080 Hb_001501_080 Hb_005463_130--Hb_001501_080 Hb_013726_080 Hb_013726_080 Hb_005463_130--Hb_013726_080 Hb_000751_030 Hb_000751_030 Hb_005463_130--Hb_000751_030 Hb_008921_010 Hb_008921_010 Hb_005463_130--Hb_008921_010 Hb_004342_020--Hb_001277_280 Hb_001377_030 Hb_001377_030 Hb_004342_020--Hb_001377_030 Hb_002450_040 Hb_002450_040 Hb_004342_020--Hb_002450_040 Hb_004342_020--Hb_011249_030 Hb_026549_020 Hb_026549_020 Hb_004342_020--Hb_026549_020 Hb_000287_050--Hb_039605_010 Hb_000139_190 Hb_000139_190 Hb_000287_050--Hb_000139_190 Hb_000287_050--Hb_065755_030 Hb_002928_010 Hb_002928_010 Hb_000287_050--Hb_002928_010 Hb_000287_050--Hb_008921_010 Hb_003228_100 Hb_003228_100 Hb_000012_270--Hb_003228_100 Hb_000012_270--Hb_000959_220 Hb_005649_100 Hb_005649_100 Hb_000012_270--Hb_005649_100 Hb_005731_110 Hb_005731_110 Hb_000012_270--Hb_005731_110 Hb_005162_110 Hb_005162_110 Hb_000012_270--Hb_005162_110 Hb_143766_020 Hb_143766_020 Hb_000012_270--Hb_143766_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.6074 24.1489 116.062 34.3932 60.9493 34.5598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.1121 19.5695 48.5308 15.507 20.5404

CAGE analysis