Hb_143766_020

Information

Type -
Description -
Location Contig143766: 15114-17945
Sequence    

Annotation

kegg
ID pop:POPTR_0006s15420g
description POPTRDRAFT_819270; hypothetical protein
nr
ID KHG12037.1
description putative phospholipase A2 [Gossypium arboreum]
swissprot
ID Q9XG80
description Probable phospholipase A2 homolog 1 OS=Oryza sativa subsp. japonica GN=PLA2-I PE=2 SV=1
trembl
ID A0A0B0NH95
description Putative phospholipase A2 OS=Gossypium arboreum GN=F383_17605 PE=3 SV=1
Gene Ontology
ID GO:0004623
description probable phospholipase a2 homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11550: 15152-17936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143766_020 0.0 - - putative phospholipase A2 [Gossypium arboreum]
2 Hb_000012_270 0.0909833713 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
3 Hb_002284_210 0.0944469926 - - PREDICTED: protein canopy-1 [Jatropha curcas]
4 Hb_000959_220 0.094931575 - - zinc finger protein, putative [Ricinus communis]
5 Hb_000663_020 0.095858995 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
6 Hb_002874_180 0.0983024777 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
7 Hb_003760_030 0.1023870859 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
8 Hb_077026_010 0.1036692748 - - PREDICTED: phosphatidylinositol 4-kinase alpha 2 [Jatropha curcas]
9 Hb_065755_030 0.1078911911 - - -
10 Hb_015292_040 0.1093190035 - - PREDICTED: myb-like protein X [Jatropha curcas]
11 Hb_002870_020 0.1132941306 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
12 Hb_006816_100 0.1137141198 - - hypothetical protein CISIN_1g0373181mg, partial [Citrus sinensis]
13 Hb_000003_170 0.1144950411 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
14 Hb_004013_030 0.1158534778 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
15 Hb_005731_110 0.1164155773 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
16 Hb_000340_130 0.1168705297 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
17 Hb_005162_110 0.1177727669 - - PREDICTED: uncharacterized protein LOC105648430 [Jatropha curcas]
18 Hb_003228_100 0.118676636 - - PREDICTED: kinesin-related protein 4 [Jatropha curcas]
19 Hb_003506_030 0.1188592348 - - PREDICTED: ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform X2 [Jatropha curcas]
20 Hb_004032_370 0.119393975 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]

Gene co-expression network

sample Hb_143766_020 Hb_143766_020 Hb_000012_270 Hb_000012_270 Hb_143766_020--Hb_000012_270 Hb_002284_210 Hb_002284_210 Hb_143766_020--Hb_002284_210 Hb_000959_220 Hb_000959_220 Hb_143766_020--Hb_000959_220 Hb_000663_020 Hb_000663_020 Hb_143766_020--Hb_000663_020 Hb_002874_180 Hb_002874_180 Hb_143766_020--Hb_002874_180 Hb_003760_030 Hb_003760_030 Hb_143766_020--Hb_003760_030 Hb_003228_100 Hb_003228_100 Hb_000012_270--Hb_003228_100 Hb_000012_270--Hb_000959_220 Hb_005649_100 Hb_005649_100 Hb_000012_270--Hb_005649_100 Hb_005731_110 Hb_005731_110 Hb_000012_270--Hb_005731_110 Hb_005162_110 Hb_005162_110 Hb_000012_270--Hb_005162_110 Hb_006816_100 Hb_006816_100 Hb_002284_210--Hb_006816_100 Hb_002284_210--Hb_003760_030 Hb_002284_210--Hb_002874_180 Hb_010098_020 Hb_010098_020 Hb_002284_210--Hb_010098_020 Hb_002686_080 Hb_002686_080 Hb_002284_210--Hb_002686_080 Hb_000959_220--Hb_005731_110 Hb_065755_030 Hb_065755_030 Hb_000959_220--Hb_065755_030 Hb_001322_020 Hb_001322_020 Hb_000959_220--Hb_001322_020 Hb_011249_030 Hb_011249_030 Hb_000959_220--Hb_011249_030 Hb_006615_050 Hb_006615_050 Hb_000959_220--Hb_006615_050 Hb_000663_020--Hb_005731_110 Hb_002218_020 Hb_002218_020 Hb_000663_020--Hb_002218_020 Hb_001195_270 Hb_001195_270 Hb_000663_020--Hb_001195_270 Hb_077026_010 Hb_077026_010 Hb_000663_020--Hb_077026_010 Hb_000663_020--Hb_005162_110 Hb_003506_030 Hb_003506_030 Hb_000663_020--Hb_003506_030 Hb_001022_030 Hb_001022_030 Hb_002874_180--Hb_001022_030 Hb_002874_180--Hb_077026_010 Hb_000058_130 Hb_000058_130 Hb_002874_180--Hb_000058_130 Hb_000003_170 Hb_000003_170 Hb_002874_180--Hb_000003_170 Hb_000028_520 Hb_000028_520 Hb_002874_180--Hb_000028_520 Hb_000003_780 Hb_000003_780 Hb_002874_180--Hb_000003_780 Hb_003119_090 Hb_003119_090 Hb_003760_030--Hb_003119_090 Hb_007007_040 Hb_007007_040 Hb_003760_030--Hb_007007_040 Hb_003760_030--Hb_065755_030 Hb_000751_030 Hb_000751_030 Hb_003760_030--Hb_000751_030 Hb_001501_080 Hb_001501_080 Hb_003760_030--Hb_001501_080 Hb_002485_030 Hb_002485_030 Hb_003760_030--Hb_002485_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.3929 15.9342 72.8658 39.0148 36.4105 20.1875
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6195 20.0273 13.4883 10.8204 30.4179

CAGE analysis