Hb_001507_080

Information

Type -
Description -
Location Contig1507: 57813-62449
Sequence    

Annotation

kegg
ID rcu:RCOM_0785250
description cyclin B, putative
nr
ID XP_012076013.1
description PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
swissprot
ID P25011
description G2/mitotic-specific cyclin S13-6 OS=Glycine max PE=2 SV=1
trembl
ID A0A067KRV7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11114 PE=3 SV=1
Gene Ontology
ID GO:0005634
description g2 mitotic-specific cyclin s13-7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12705: 56376-58072 , PASA_asmbl_12706: 59567-62383
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001507_080 0.0 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
2 Hb_010998_050 0.1519401658 - - PREDICTED: kinesin-like protein KIF22 isoform X2 [Jatropha curcas]
3 Hb_036790_030 0.1745078152 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
4 Hb_000345_130 0.1761212986 - - unnamed protein product [Coffea canephora]
5 Hb_002067_010 0.1815744134 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000349_230 0.1951863492 - - PREDICTED: protein TPX2 [Jatropha curcas]
7 Hb_000345_410 0.1952297847 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
8 Hb_002007_280 0.1969602781 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
9 Hb_005162_130 0.2133809855 - - PREDICTED: uncharacterized protein LOC105648433 isoform X2 [Jatropha curcas]
10 Hb_000321_080 0.2156146653 - - histone H4 [Zea mays]
11 Hb_000640_050 0.2196499135 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
12 Hb_003399_100 0.2234388296 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
13 Hb_044662_050 0.2241778084 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
14 Hb_114310_120 0.2242319626 - - PREDICTED: 50S ribosomal protein L31, chloroplastic [Eucalyptus grandis]
15 Hb_001252_240 0.2352960243 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
16 Hb_005725_150 0.2354323765 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
17 Hb_002307_020 0.2376296126 - - PREDICTED: histone H1-like [Jatropha curcas]
18 Hb_003938_170 0.2384884214 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
19 Hb_004342_020 0.2385683393 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
20 Hb_002259_200 0.2412102177 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001507_080 Hb_001507_080 Hb_010998_050 Hb_010998_050 Hb_001507_080--Hb_010998_050 Hb_036790_030 Hb_036790_030 Hb_001507_080--Hb_036790_030 Hb_000345_130 Hb_000345_130 Hb_001507_080--Hb_000345_130 Hb_002067_010 Hb_002067_010 Hb_001507_080--Hb_002067_010 Hb_000349_230 Hb_000349_230 Hb_001507_080--Hb_000349_230 Hb_000345_410 Hb_000345_410 Hb_001507_080--Hb_000345_410 Hb_010998_050--Hb_036790_030 Hb_010998_050--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_010998_050--Hb_002007_280 Hb_010998_050--Hb_000349_230 Hb_010998_050--Hb_000345_130 Hb_005162_130 Hb_005162_130 Hb_010998_050--Hb_005162_130 Hb_036790_030--Hb_000345_130 Hb_002307_020 Hb_002307_020 Hb_036790_030--Hb_002307_020 Hb_000739_270 Hb_000739_270 Hb_036790_030--Hb_000739_270 Hb_002007_040 Hb_002007_040 Hb_036790_030--Hb_002007_040 Hb_036790_030--Hb_000349_230 Hb_000345_130--Hb_002007_280 Hb_000345_130--Hb_005162_130 Hb_000345_130--Hb_000349_230 Hb_000345_130--Hb_000345_410 Hb_074792_010 Hb_074792_010 Hb_002067_010--Hb_074792_010 Hb_003430_040 Hb_003430_040 Hb_002067_010--Hb_003430_040 Hb_003874_010 Hb_003874_010 Hb_002067_010--Hb_003874_010 Hb_004342_020 Hb_004342_020 Hb_002067_010--Hb_004342_020 Hb_010080_010 Hb_010080_010 Hb_002067_010--Hb_010080_010 Hb_000349_230--Hb_002007_280 Hb_000349_230--Hb_005162_130 Hb_000349_230--Hb_000345_410 Hb_029510_130 Hb_029510_130 Hb_000349_230--Hb_029510_130 Hb_000345_410--Hb_002007_280 Hb_000345_410--Hb_005162_130 Hb_008406_100 Hb_008406_100 Hb_000345_410--Hb_008406_100 Hb_000321_080 Hb_000321_080 Hb_000345_410--Hb_000321_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1107 0.824336 47.7693 7.99715 8.75955 1.98036
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.98828 4.03862 5.76947 1.74631 1.23757

CAGE analysis