Hb_005725_200

Information

Type transcription factor
Description TF Family: GRF
Location Contig5725: 102647-108696
Sequence    

Annotation

kegg
ID tcc:TCM_034655
description Growth-regulating factor 1
nr
ID KDP41582.1
description hypothetical protein JCGZ_15989 [Jatropha curcas]
swissprot
ID Q6AWY3
description Growth-regulating factor 6 OS=Oryza sativa subsp. japonica GN=GRF6 PE=2 SV=2
trembl
ID A0A067KZH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15989 PE=4 SV=1
Gene Ontology
ID GO:0005634
description growth-regulating factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49418: 105273-106043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_200 0.0 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
2 Hb_000088_220 0.2266709765 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
3 Hb_000679_120 0.2289432006 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
4 Hb_000321_080 0.2429992471 - - histone H4 [Zea mays]
5 Hb_001946_350 0.2464864155 - - PREDICTED: uncharacterized protein LOC105639338 [Jatropha curcas]
6 Hb_032208_020 0.2507235081 - - hypothetical protein JCGZ_01894 [Jatropha curcas]
7 Hb_044662_050 0.2551860452 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
8 Hb_006671_020 0.2645744941 - - hypothetical protein CISIN_1g0407181mg, partial [Citrus sinensis]
9 Hb_000345_410 0.2654819045 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
10 Hb_004449_140 0.26873356 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
11 Hb_000653_020 0.2746532496 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
12 Hb_013016_010 0.2748757999 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002067_010 0.276130492 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000640_050 0.2790929972 - - DNA replication licensing factor MCM7, putative [Ricinus communis]
15 Hb_001431_110 0.2826901646 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
16 Hb_000349_230 0.2835559055 - - PREDICTED: protein TPX2 [Jatropha curcas]
17 Hb_002007_280 0.2841397312 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
18 Hb_005048_110 0.2874424178 - - -
19 Hb_002641_040 0.2880397626 - - class III peroxidase [Populus trichocarpa]
20 Hb_002259_200 0.2885545357 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005725_200 Hb_005725_200 Hb_000088_220 Hb_000088_220 Hb_005725_200--Hb_000088_220 Hb_000679_120 Hb_000679_120 Hb_005725_200--Hb_000679_120 Hb_000321_080 Hb_000321_080 Hb_005725_200--Hb_000321_080 Hb_001946_350 Hb_001946_350 Hb_005725_200--Hb_001946_350 Hb_032208_020 Hb_032208_020 Hb_005725_200--Hb_032208_020 Hb_044662_050 Hb_044662_050 Hb_005725_200--Hb_044662_050 Hb_032264_080 Hb_032264_080 Hb_000088_220--Hb_032264_080 Hb_000369_010 Hb_000369_010 Hb_000088_220--Hb_000369_010 Hb_004342_020 Hb_004342_020 Hb_000088_220--Hb_004342_020 Hb_006671_020 Hb_006671_020 Hb_000088_220--Hb_006671_020 Hb_000120_250 Hb_000120_250 Hb_000088_220--Hb_000120_250 Hb_003897_020 Hb_003897_020 Hb_000679_120--Hb_003897_020 Hb_000679_120--Hb_000321_080 Hb_002641_040 Hb_002641_040 Hb_000679_120--Hb_002641_040 Hb_001431_110 Hb_001431_110 Hb_000679_120--Hb_001431_110 Hb_002067_010 Hb_002067_010 Hb_000679_120--Hb_002067_010 Hb_000345_410 Hb_000345_410 Hb_000321_080--Hb_000345_410 Hb_002007_280 Hb_002007_280 Hb_000321_080--Hb_002007_280 Hb_000321_080--Hb_044662_050 Hb_005162_130 Hb_005162_130 Hb_000321_080--Hb_005162_130 Hb_002007_040 Hb_002007_040 Hb_000321_080--Hb_002007_040 Hb_008406_100 Hb_008406_100 Hb_000321_080--Hb_008406_100 Hb_000215_370 Hb_000215_370 Hb_001946_350--Hb_000215_370 Hb_000025_170 Hb_000025_170 Hb_001946_350--Hb_000025_170 Hb_001946_350--Hb_000088_220 Hb_005725_150 Hb_005725_150 Hb_001946_350--Hb_005725_150 Hb_003399_100 Hb_003399_100 Hb_001946_350--Hb_003399_100 Hb_003750_070 Hb_003750_070 Hb_032208_020--Hb_003750_070 Hb_001300_210 Hb_001300_210 Hb_032208_020--Hb_001300_210 Hb_002681_030 Hb_002681_030 Hb_032208_020--Hb_002681_030 Hb_004228_080 Hb_004228_080 Hb_032208_020--Hb_004228_080 Hb_004545_020 Hb_004545_020 Hb_032208_020--Hb_004545_020 Hb_001252_240 Hb_001252_240 Hb_032208_020--Hb_001252_240 Hb_044662_050--Hb_002007_040 Hb_002221_010 Hb_002221_010 Hb_044662_050--Hb_002221_010 Hb_004449_140 Hb_004449_140 Hb_044662_050--Hb_004449_140 Hb_000653_020 Hb_000653_020 Hb_044662_050--Hb_000653_020 Hb_044662_050--Hb_002007_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06651 0.141972 3.10174 0.206263 0.189689 0.0966342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.21488 0.491874 0.175464 0.37871 0

CAGE analysis