Hb_044662_050

Information

Type -
Description -
Location Contig44662: 40101-41752
Sequence    

Annotation

kegg
ID pop:POPTR_0002s08440g
description POPTRDRAFT_551458; hypothetical protein
nr
ID XP_002302235.2
description hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GU42
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08440g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43081: 40046-41714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_044662_050 0.0 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
2 Hb_000321_080 0.133258101 - - histone H4 [Zea mays]
3 Hb_002007_040 0.186043515 - - unnamed protein product [Coffea canephora]
4 Hb_002221_010 0.1871820376 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]
5 Hb_004449_140 0.1889266459 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
6 Hb_000653_020 0.1919532794 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
7 Hb_002007_280 0.1961830364 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
8 Hb_007002_050 0.2002726107 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
9 Hb_002693_040 0.2042464696 - - hypersensitive-induced response protein [Carica papaya]
10 Hb_000345_410 0.2052244633 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
11 Hb_001279_050 0.2053935251 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
12 Hb_036790_030 0.2131829082 - - PREDICTED: UPF0544 protein C5orf45 homolog [Jatropha curcas]
13 Hb_004586_310 0.2149342689 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002641_040 0.217585056 - - class III peroxidase [Populus trichocarpa]
15 Hb_000347_140 0.2225015574 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
16 Hb_001507_080 0.2241778084 - - PREDICTED: G2/mitotic-specific cyclin S13-7 [Jatropha curcas]
17 Hb_003430_040 0.2247712839 - - spermidine synthase 1, putative [Ricinus communis]
18 Hb_002307_020 0.2249408495 - - PREDICTED: histone H1-like [Jatropha curcas]
19 Hb_114292_010 0.2270934727 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000367_240 0.2285249168 - - hypothetical protein JCGZ_11682 [Jatropha curcas]

Gene co-expression network

sample Hb_044662_050 Hb_044662_050 Hb_000321_080 Hb_000321_080 Hb_044662_050--Hb_000321_080 Hb_002007_040 Hb_002007_040 Hb_044662_050--Hb_002007_040 Hb_002221_010 Hb_002221_010 Hb_044662_050--Hb_002221_010 Hb_004449_140 Hb_004449_140 Hb_044662_050--Hb_004449_140 Hb_000653_020 Hb_000653_020 Hb_044662_050--Hb_000653_020 Hb_002007_280 Hb_002007_280 Hb_044662_050--Hb_002007_280 Hb_000345_410 Hb_000345_410 Hb_000321_080--Hb_000345_410 Hb_000321_080--Hb_002007_280 Hb_005162_130 Hb_005162_130 Hb_000321_080--Hb_005162_130 Hb_000321_080--Hb_002007_040 Hb_008406_100 Hb_008406_100 Hb_000321_080--Hb_008406_100 Hb_002307_020 Hb_002307_020 Hb_002007_040--Hb_002307_020 Hb_000051_080 Hb_000051_080 Hb_002007_040--Hb_000051_080 Hb_001478_020 Hb_001478_020 Hb_002007_040--Hb_001478_020 Hb_005725_150 Hb_005725_150 Hb_002007_040--Hb_005725_150 Hb_001501_070 Hb_001501_070 Hb_002007_040--Hb_001501_070 Hb_003784_040 Hb_003784_040 Hb_002007_040--Hb_003784_040 Hb_000115_190 Hb_000115_190 Hb_002221_010--Hb_000115_190 Hb_002693_040 Hb_002693_040 Hb_002221_010--Hb_002693_040 Hb_001279_050 Hb_001279_050 Hb_002221_010--Hb_001279_050 Hb_005162_120 Hb_005162_120 Hb_002221_010--Hb_005162_120 Hb_002218_050 Hb_002218_050 Hb_002221_010--Hb_002218_050 Hb_114292_010 Hb_114292_010 Hb_002221_010--Hb_114292_010 Hb_001214_190 Hb_001214_190 Hb_004449_140--Hb_001214_190 Hb_176472_020 Hb_176472_020 Hb_004449_140--Hb_176472_020 Hb_003430_040 Hb_003430_040 Hb_004449_140--Hb_003430_040 Hb_074792_010 Hb_074792_010 Hb_004449_140--Hb_074792_010 Hb_003938_170 Hb_003938_170 Hb_004449_140--Hb_003938_170 Hb_002218_100 Hb_002218_100 Hb_004449_140--Hb_002218_100 Hb_013016_010 Hb_013016_010 Hb_000653_020--Hb_013016_010 Hb_000653_020--Hb_074792_010 Hb_000347_140 Hb_000347_140 Hb_000653_020--Hb_000347_140 Hb_028487_120 Hb_028487_120 Hb_000653_020--Hb_028487_120 Hb_000653_020--Hb_004449_140 Hb_002007_280--Hb_000345_410 Hb_002007_280--Hb_005162_130 Hb_000345_130 Hb_000345_130 Hb_002007_280--Hb_000345_130 Hb_002007_280--Hb_008406_100 Hb_000349_230 Hb_000349_230 Hb_002007_280--Hb_000349_230 Hb_029510_130 Hb_029510_130 Hb_002007_280--Hb_029510_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2554 5.34437 147.715 11.6193 3.16588 1.79322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3859 8.08513 4.79124 3.11937 4.37921

CAGE analysis