Hb_002641_040

Information

Type -
Description -
Location Contig2641: 85233-86575
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10270g
description POPTRDRAFT_873745; peroxidase 40 family protein
nr
ID AHL39159.1
description class III peroxidase [Populus trichocarpa]
swissprot
ID O23474
description Peroxidase 40 OS=Arabidopsis thaliana GN=PER40 PE=2 SV=2
trembl
ID W8Q496
description Peroxidase OS=Populus trichocarpa GN=PRX55 PE=2 SV=1
Gene Ontology
ID GO:0005576
description peroxidase 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27650: 85820-86507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002641_040 0.0 - - class III peroxidase [Populus trichocarpa]
2 Hb_044662_050 0.217585056 - - hypothetical protein POPTR_0002s08440g [Populus trichocarpa]
3 Hb_000264_120 0.2205971818 - - Stem-specific protein TSJT1, putative [Ricinus communis]
4 Hb_007002_050 0.2458774862 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
5 Hb_000679_120 0.2536865848 - - hypothetical protein POPTR_0018s01610g [Populus trichocarpa]
6 Hb_000321_080 0.2591750828 - - histone H4 [Zea mays]
7 Hb_002007_040 0.2704784572 - - unnamed protein product [Coffea canephora]
8 Hb_000367_240 0.2713260276 - - hypothetical protein JCGZ_11682 [Jatropha curcas]
9 Hb_000497_240 0.2733021285 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_000025_170 0.2763553075 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000111_410 0.2775436994 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005725_150 0.2784776056 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
13 Hb_004449_140 0.2789019606 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
14 Hb_004410_040 0.2812796674 - - ATP binding protein, putative [Ricinus communis]
15 Hb_011360_130 0.2839395865 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000051_080 0.2841177483 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
17 Hb_114292_010 0.2845451754 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005725_200 0.2880397626 transcription factor TF Family: GRF hypothetical protein JCGZ_15989 [Jatropha curcas]
19 Hb_002007_280 0.2891804976 - - PREDICTED: kinesin-like protein KIFC3 [Jatropha curcas]
20 Hb_002221_010 0.2950309303 - - PREDICTED: adenylyl-sulfate kinase 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002641_040 Hb_002641_040 Hb_044662_050 Hb_044662_050 Hb_002641_040--Hb_044662_050 Hb_000264_120 Hb_000264_120 Hb_002641_040--Hb_000264_120 Hb_007002_050 Hb_007002_050 Hb_002641_040--Hb_007002_050 Hb_000679_120 Hb_000679_120 Hb_002641_040--Hb_000679_120 Hb_000321_080 Hb_000321_080 Hb_002641_040--Hb_000321_080 Hb_002007_040 Hb_002007_040 Hb_002641_040--Hb_002007_040 Hb_044662_050--Hb_000321_080 Hb_044662_050--Hb_002007_040 Hb_002221_010 Hb_002221_010 Hb_044662_050--Hb_002221_010 Hb_004449_140 Hb_004449_140 Hb_044662_050--Hb_004449_140 Hb_000653_020 Hb_000653_020 Hb_044662_050--Hb_000653_020 Hb_002007_280 Hb_002007_280 Hb_044662_050--Hb_002007_280 Hb_000349_190 Hb_000349_190 Hb_000264_120--Hb_000349_190 Hb_004129_080 Hb_004129_080 Hb_000264_120--Hb_004129_080 Hb_000181_190 Hb_000181_190 Hb_000264_120--Hb_000181_190 Hb_089889_010 Hb_089889_010 Hb_000264_120--Hb_089889_010 Hb_004163_020 Hb_004163_020 Hb_000264_120--Hb_004163_020 Hb_005162_120 Hb_005162_120 Hb_007002_050--Hb_005162_120 Hb_007002_050--Hb_002221_010 Hb_007002_050--Hb_002007_040 Hb_003638_040 Hb_003638_040 Hb_007002_050--Hb_003638_040 Hb_000028_250 Hb_000028_250 Hb_007002_050--Hb_000028_250 Hb_011360_130 Hb_011360_130 Hb_007002_050--Hb_011360_130 Hb_005725_200 Hb_005725_200 Hb_000679_120--Hb_005725_200 Hb_003897_020 Hb_003897_020 Hb_000679_120--Hb_003897_020 Hb_000679_120--Hb_000321_080 Hb_001431_110 Hb_001431_110 Hb_000679_120--Hb_001431_110 Hb_002067_010 Hb_002067_010 Hb_000679_120--Hb_002067_010 Hb_000345_410 Hb_000345_410 Hb_000321_080--Hb_000345_410 Hb_000321_080--Hb_002007_280 Hb_005162_130 Hb_005162_130 Hb_000321_080--Hb_005162_130 Hb_000321_080--Hb_002007_040 Hb_008406_100 Hb_008406_100 Hb_000321_080--Hb_008406_100 Hb_002307_020 Hb_002307_020 Hb_002007_040--Hb_002307_020 Hb_000051_080 Hb_000051_080 Hb_002007_040--Hb_000051_080 Hb_001478_020 Hb_001478_020 Hb_002007_040--Hb_001478_020 Hb_005725_150 Hb_005725_150 Hb_002007_040--Hb_005725_150 Hb_001501_070 Hb_001501_070 Hb_002007_040--Hb_001501_070 Hb_003784_040 Hb_003784_040 Hb_002007_040--Hb_003784_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116554 0.0168804 0.873633 0.111692 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0463998 0.109487 0.0674765 0 0

CAGE analysis