Hb_004129_080

Information

Type -
Description -
Location Contig4129: 64519-65322
Sequence    

Annotation

kegg
ID pmum:103328835
description putative DNA-binding protein ESCAROLA
nr
ID XP_008229461.1
description PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
swissprot
ID Q9SJG4
description AT-hook motif nuclear-localized protein 16 OS=Arabidopsis thaliana GN=AHL16 PE=1 SV=1
trembl
ID B9GT32
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s06030g PE=4 SV=2
Gene Ontology
ID GO:0031490
description dna-binding protein escarola

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40892: 65780-75868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_080 0.0 - - PREDICTED: putative DNA-binding protein ESCAROLA [Prunus mume]
2 Hb_000349_190 0.2125296422 transcription factor TF Family: GRF hypothetical protein POPTR_0001s08310g [Populus trichocarpa]
3 Hb_000264_120 0.2317110521 - - Stem-specific protein TSJT1, putative [Ricinus communis]
4 Hb_002639_170 0.2476065717 - - carboxy-lyase, putative [Ricinus communis]
5 Hb_004586_310 0.2488527702 - - conserved hypothetical protein [Ricinus communis]
6 Hb_114292_010 0.2546648519 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000975_140 0.261217014 - - lactoylglutathione lyase family protein [Populus trichocarpa]
8 Hb_003401_010 0.2632163432 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
9 Hb_004163_020 0.2649041049 - - -
10 Hb_000111_400 0.2696009119 - - hypothetical protein POPTR_0003s19310g [Populus trichocarpa]
11 Hb_005162_120 0.2706924355 - - ferric reductase oxidase [Manihot esculenta]
12 Hb_001935_040 0.2756808737 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 8 [Jatropha curcas]
13 Hb_008453_120 0.2772585583 transcription factor TF Family: bZIP hypothetical protein POPTR_0005s26480g [Populus trichocarpa]
14 Hb_005694_070 0.2782922253 - - kinase, putative [Ricinus communis]
15 Hb_000042_040 0.2812651145 - - PREDICTED: F-box/kelch-repeat protein At3g23880-like [Jatropha curcas]
16 Hb_002979_030 0.2839530816 - - PREDICTED: serine/threonine-protein kinase Aurora-1 isoform X2 [Jatropha curcas]
17 Hb_000025_390 0.2860824253 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
18 Hb_000165_270 0.2864062741 transcription factor TF Family: Tify JAZ10 [Hevea brasiliensis]
19 Hb_010288_050 0.288892741 - - PREDICTED: uncharacterized protein LOC105642604 [Jatropha curcas]
20 Hb_000069_250 0.2914191988 - - hypothetical protein JCGZ_14250 [Jatropha curcas]

Gene co-expression network

sample Hb_004129_080 Hb_004129_080 Hb_000349_190 Hb_000349_190 Hb_004129_080--Hb_000349_190 Hb_000264_120 Hb_000264_120 Hb_004129_080--Hb_000264_120 Hb_002639_170 Hb_002639_170 Hb_004129_080--Hb_002639_170 Hb_004586_310 Hb_004586_310 Hb_004129_080--Hb_004586_310 Hb_114292_010 Hb_114292_010 Hb_004129_080--Hb_114292_010 Hb_000975_140 Hb_000975_140 Hb_004129_080--Hb_000975_140 Hb_004163_020 Hb_004163_020 Hb_000349_190--Hb_004163_020 Hb_000349_190--Hb_000264_120 Hb_000349_190--Hb_000975_140 Hb_001246_050 Hb_001246_050 Hb_000349_190--Hb_001246_050 Hb_000042_040 Hb_000042_040 Hb_000349_190--Hb_000042_040 Hb_002641_040 Hb_002641_040 Hb_000264_120--Hb_002641_040 Hb_000181_190 Hb_000181_190 Hb_000264_120--Hb_000181_190 Hb_089889_010 Hb_089889_010 Hb_000264_120--Hb_089889_010 Hb_000264_120--Hb_004163_020 Hb_005162_120 Hb_005162_120 Hb_002639_170--Hb_005162_120 Hb_011609_130 Hb_011609_130 Hb_002639_170--Hb_011609_130 Hb_000261_530 Hb_000261_530 Hb_002639_170--Hb_000261_530 Hb_010288_050 Hb_010288_050 Hb_002639_170--Hb_010288_050 Hb_001241_020 Hb_001241_020 Hb_002639_170--Hb_001241_020 Hb_007317_100 Hb_007317_100 Hb_002639_170--Hb_007317_100 Hb_005686_100 Hb_005686_100 Hb_004586_310--Hb_005686_100 Hb_004586_310--Hb_114292_010 Hb_005694_070 Hb_005694_070 Hb_004586_310--Hb_005694_070 Hb_001007_090 Hb_001007_090 Hb_004586_310--Hb_001007_090 Hb_001143_200 Hb_001143_200 Hb_004586_310--Hb_001143_200 Hb_002221_010 Hb_002221_010 Hb_004586_310--Hb_002221_010 Hb_001935_040 Hb_001935_040 Hb_114292_010--Hb_001935_040 Hb_000142_030 Hb_000142_030 Hb_114292_010--Hb_000142_030 Hb_002218_050 Hb_002218_050 Hb_114292_010--Hb_002218_050 Hb_000115_190 Hb_000115_190 Hb_114292_010--Hb_000115_190 Hb_000347_160 Hb_000347_160 Hb_114292_010--Hb_000347_160 Hb_000367_240 Hb_000367_240 Hb_114292_010--Hb_000367_240 Hb_000975_140--Hb_000042_040 Hb_000975_140--Hb_000347_160 Hb_087793_010 Hb_087793_010 Hb_000975_140--Hb_087793_010 Hb_000107_670 Hb_000107_670 Hb_000975_140--Hb_000107_670 Hb_000975_140--Hb_114292_010 Hb_004449_160 Hb_004449_160 Hb_000975_140--Hb_004449_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0977062 1.15031 0.076047 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0670416 0.21086 0 0 0

CAGE analysis