Hb_000107_670

Information

Type transcription factor
Description TF Family: MIKC
Location Contig107: 542053-549216
Sequence    

Annotation

kegg
ID tcc:TCM_029596
description K-box region and MADS-box transcription factor family protein isoform 1
nr
ID NP_001292936.1
description floral homeotic protein AGAMOUS [Jatropha curcas]
swissprot
ID Q40872
description Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1
trembl
ID F2YNG6
description AGAMOUS-like protein OS=Jatropha curcas GN=JCGZ_21634 PE=2 SV=1
Gene Ontology
ID GO:0005634
description k-box region and mads-box transcription factor family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000107_670 0.0 transcription factor TF Family: MIKC floral homeotic protein AGAMOUS [Jatropha curcas]
2 Hb_000069_390 0.1963480053 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
3 Hb_000975_140 0.2071128487 - - lactoylglutathione lyase family protein [Populus trichocarpa]
4 Hb_007416_380 0.2092779036 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
5 Hb_002942_170 0.215477869 - - acyl carrier protein, putative [Ricinus communis]
6 Hb_000866_100 0.2277443273 - - PREDICTED: protein PAIR1 isoform X2 [Jatropha curcas]
7 Hb_000284_280 0.2310220232 - - -
8 Hb_156853_010 0.236298607 - - PREDICTED: vinorine synthase-like [Populus euphratica]
9 Hb_009838_170 0.2364314332 - - Arylacetamide deacetylase, putative [Ricinus communis]
10 Hb_002259_100 0.2373153462 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
11 Hb_004645_060 0.2373543687 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
12 Hb_001817_200 0.2374257901 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
13 Hb_002391_260 0.2374885478 - - hypothetical protein RCOM_0017280 [Ricinus communis]
14 Hb_001571_070 0.2375209721 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
15 Hb_000413_090 0.2376695792 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
16 Hb_009323_010 0.2378148107 - - hypothetical protein POPTR_0008s03350g, partial [Populus trichocarpa]
17 Hb_007552_030 0.238047137 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21064 [Jatropha curcas]
18 Hb_001322_060 0.2380880608 - - unnamed protein product [Vitis vinifera]
19 Hb_000003_800 0.2380894339 - - conserved hypothetical protein [Ricinus communis]
20 Hb_137288_010 0.2381656712 - - hypothetical protein B456_003G055000 [Gossypium raimondii]

Gene co-expression network

sample Hb_000107_670 Hb_000107_670 Hb_000069_390 Hb_000069_390 Hb_000107_670--Hb_000069_390 Hb_000975_140 Hb_000975_140 Hb_000107_670--Hb_000975_140 Hb_007416_380 Hb_007416_380 Hb_000107_670--Hb_007416_380 Hb_002942_170 Hb_002942_170 Hb_000107_670--Hb_002942_170 Hb_000866_100 Hb_000866_100 Hb_000107_670--Hb_000866_100 Hb_000284_280 Hb_000284_280 Hb_000107_670--Hb_000284_280 Hb_000069_390--Hb_007416_380 Hb_000574_520 Hb_000574_520 Hb_000069_390--Hb_000574_520 Hb_141199_010 Hb_141199_010 Hb_000069_390--Hb_141199_010 Hb_005181_020 Hb_005181_020 Hb_000069_390--Hb_005181_020 Hb_004449_160 Hb_004449_160 Hb_000069_390--Hb_004449_160 Hb_002450_150 Hb_002450_150 Hb_000069_390--Hb_002450_150 Hb_000042_040 Hb_000042_040 Hb_000975_140--Hb_000042_040 Hb_000347_160 Hb_000347_160 Hb_000975_140--Hb_000347_160 Hb_087793_010 Hb_087793_010 Hb_000975_140--Hb_087793_010 Hb_114292_010 Hb_114292_010 Hb_000975_140--Hb_114292_010 Hb_000975_140--Hb_004449_160 Hb_007416_380--Hb_000574_520 Hb_007416_380--Hb_141199_010 Hb_007416_380--Hb_005181_020 Hb_183612_020 Hb_183612_020 Hb_007416_380--Hb_183612_020 Hb_007416_380--Hb_002450_150 Hb_001329_010 Hb_001329_010 Hb_002942_170--Hb_001329_010 Hb_002811_220 Hb_002811_220 Hb_002942_170--Hb_002811_220 Hb_022425_020 Hb_022425_020 Hb_002942_170--Hb_022425_020 Hb_173638_010 Hb_173638_010 Hb_002942_170--Hb_173638_010 Hb_007904_050 Hb_007904_050 Hb_002942_170--Hb_007904_050 Hb_001366_280 Hb_001366_280 Hb_002942_170--Hb_001366_280 Hb_003740_030 Hb_003740_030 Hb_000866_100--Hb_003740_030 Hb_000866_100--Hb_000284_280 Hb_034498_010 Hb_034498_010 Hb_000866_100--Hb_034498_010 Hb_001390_040 Hb_001390_040 Hb_000866_100--Hb_001390_040 Hb_022845_010 Hb_022845_010 Hb_000866_100--Hb_022845_010 Hb_001322_220 Hb_001322_220 Hb_000866_100--Hb_001322_220 Hb_001946_090 Hb_001946_090 Hb_000284_280--Hb_001946_090 Hb_005065_090 Hb_005065_090 Hb_000284_280--Hb_005065_090 Hb_000760_090 Hb_000760_090 Hb_000284_280--Hb_000760_090 Hb_010543_010 Hb_010543_010 Hb_000284_280--Hb_010543_010 Hb_001488_170 Hb_001488_170 Hb_000284_280--Hb_001488_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.783223 0.310908 0 0.0722308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0604799 0 0 0

CAGE analysis