Hb_183612_020

Information

Type -
Description -
Location Contig183612: 16826-17437
Sequence    

Annotation

kegg
ID rcu:RCOM_1061160
description heat-shock protein, putative
nr
ID XP_010264261.1
description PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
swissprot
ID P46254
description Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1
trembl
ID B9SSG1
description Heat-shock protein, putative OS=Ricinus communis GN=RCOM_1061160 PE=3 SV=1
Gene Ontology
ID GO:0009408
description heat shock 22 kda mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183612_020 0.0 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
2 Hb_000574_520 0.1234487519 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
3 Hb_002450_150 0.1613521475 - - ATP binding protein, putative [Ricinus communis]
4 Hb_007416_380 0.1842598181 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
5 Hb_059295_010 0.1877018287 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
6 Hb_141199_010 0.1983365835 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_001829_030 0.2012207516 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
8 Hb_001396_060 0.2013798211 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000069_390 0.2032172968 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
10 Hb_000019_090 0.2111211192 - - PREDICTED: thioredoxin H4-1-like [Jatropha curcas]
11 Hb_057597_020 0.2128176729 - - PREDICTED: anti-H(O) lectin-like [Gossypium raimondii]
12 Hb_008147_110 0.2137480825 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
13 Hb_007223_020 0.2148733789 - - PREDICTED: probable inorganic phosphate transporter 1-3 [Jatropha curcas]
14 Hb_105478_010 0.2224245047 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
15 Hb_005181_020 0.2236407873 - - Pectinesterase-2 precursor, putative [Ricinus communis]
16 Hb_000429_210 0.2359507777 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
17 Hb_000668_120 0.2482911492 - - hypothetical protein JCGZ_11991 [Jatropha curcas]
18 Hb_171646_010 0.2617668185 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
19 Hb_011224_090 0.2682844892 - - PREDICTED: ABC transporter G family member 26 [Jatropha curcas]
20 Hb_124302_010 0.2701839972 - - PREDICTED: serine carboxypeptidase-like [Jatropha curcas]

Gene co-expression network

sample Hb_183612_020 Hb_183612_020 Hb_000574_520 Hb_000574_520 Hb_183612_020--Hb_000574_520 Hb_002450_150 Hb_002450_150 Hb_183612_020--Hb_002450_150 Hb_007416_380 Hb_007416_380 Hb_183612_020--Hb_007416_380 Hb_059295_010 Hb_059295_010 Hb_183612_020--Hb_059295_010 Hb_141199_010 Hb_141199_010 Hb_183612_020--Hb_141199_010 Hb_001829_030 Hb_001829_030 Hb_183612_020--Hb_001829_030 Hb_000574_520--Hb_007416_380 Hb_000069_390 Hb_000069_390 Hb_000574_520--Hb_000069_390 Hb_000574_520--Hb_002450_150 Hb_000574_520--Hb_141199_010 Hb_005181_020 Hb_005181_020 Hb_000574_520--Hb_005181_020 Hb_002450_150--Hb_007416_380 Hb_002450_150--Hb_000069_390 Hb_002450_150--Hb_141199_010 Hb_000000_040 Hb_000000_040 Hb_002450_150--Hb_000000_040 Hb_007416_380--Hb_000069_390 Hb_007416_380--Hb_141199_010 Hb_007416_380--Hb_005181_020 Hb_059295_010--Hb_000574_520 Hb_000069_400 Hb_000069_400 Hb_059295_010--Hb_000069_400 Hb_059295_010--Hb_001829_030 Hb_008147_110 Hb_008147_110 Hb_059295_010--Hb_008147_110 Hb_001396_060 Hb_001396_060 Hb_059295_010--Hb_001396_060 Hb_141199_010--Hb_005181_020 Hb_141199_010--Hb_000069_390 Hb_007904_050 Hb_007904_050 Hb_141199_010--Hb_007904_050 Hb_001829_030--Hb_008147_110 Hb_105478_010 Hb_105478_010 Hb_001829_030--Hb_105478_010 Hb_001829_030--Hb_001396_060 Hb_000019_090 Hb_000019_090 Hb_001829_030--Hb_000019_090 Hb_057597_020 Hb_057597_020 Hb_001829_030--Hb_057597_020 Hb_003053_040 Hb_003053_040 Hb_001829_030--Hb_003053_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.21405 0.0741554 0 0.212073
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0436813 0

CAGE analysis