Hb_001829_030

Information

Type -
Description -
Location Contig1829: 39156-39431
Sequence    

Annotation

kegg
ID pop:POPTR_0387s00200g
description hypothetical protein
nr
ID XP_011015486.1
description PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9HVE7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s25490g PE=4 SV=2
Gene Ontology
ID GO:0006950
description f-box rni-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001829_030 0.0 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
2 Hb_008147_110 0.0461491505 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
3 Hb_105478_010 0.0675761412 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
4 Hb_001396_060 0.072590263 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000019_090 0.1099041979 - - PREDICTED: thioredoxin H4-1-like [Jatropha curcas]
6 Hb_057597_020 0.1147213223 - - PREDICTED: anti-H(O) lectin-like [Gossypium raimondii]
7 Hb_003053_040 0.1651961241 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
8 Hb_003462_130 0.1821348695 - - -
9 Hb_183612_020 0.2012207516 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
10 Hb_005357_190 0.2023670513 - - Protein COBRA precursor, putative [Ricinus communis]
11 Hb_001217_030 0.2032141517 - - -
12 Hb_003494_250 0.2445735971 - - -
13 Hb_000172_500 0.2454194184 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007223_020 0.2459843138 - - PREDICTED: probable inorganic phosphate transporter 1-3 [Jatropha curcas]
15 Hb_059295_010 0.2526219567 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
16 Hb_000574_520 0.2603775934 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
17 Hb_123304_010 0.2810600305 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
18 Hb_141199_010 0.2812426096 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_007416_380 0.2832634406 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
20 Hb_011781_050 0.2834409586 - - -

Gene co-expression network

sample Hb_001829_030 Hb_001829_030 Hb_008147_110 Hb_008147_110 Hb_001829_030--Hb_008147_110 Hb_105478_010 Hb_105478_010 Hb_001829_030--Hb_105478_010 Hb_001396_060 Hb_001396_060 Hb_001829_030--Hb_001396_060 Hb_000019_090 Hb_000019_090 Hb_001829_030--Hb_000019_090 Hb_057597_020 Hb_057597_020 Hb_001829_030--Hb_057597_020 Hb_003053_040 Hb_003053_040 Hb_001829_030--Hb_003053_040 Hb_008147_110--Hb_105478_010 Hb_008147_110--Hb_001396_060 Hb_008147_110--Hb_003053_040 Hb_003462_130 Hb_003462_130 Hb_008147_110--Hb_003462_130 Hb_008147_110--Hb_000019_090 Hb_105478_010--Hb_003053_040 Hb_105478_010--Hb_003462_130 Hb_005357_190 Hb_005357_190 Hb_105478_010--Hb_005357_190 Hb_001217_030 Hb_001217_030 Hb_105478_010--Hb_001217_030 Hb_001396_060--Hb_000019_090 Hb_001396_060--Hb_057597_020 Hb_001396_060--Hb_105478_010 Hb_183612_020 Hb_183612_020 Hb_001396_060--Hb_183612_020 Hb_000019_090--Hb_057597_020 Hb_000019_090--Hb_105478_010 Hb_000172_500 Hb_000172_500 Hb_000019_090--Hb_000172_500 Hb_057597_020--Hb_008147_110 Hb_057597_020--Hb_105478_010 Hb_057597_020--Hb_000172_500 Hb_003053_040--Hb_003462_130 Hb_003053_040--Hb_005357_190 Hb_003053_040--Hb_001217_030 Hb_003494_250 Hb_003494_250 Hb_003053_040--Hb_003494_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.883249 0 0 0.193912
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis