Hb_000172_500

Information

Type -
Description -
Location Contig172: 576754-577009
Sequence    

Annotation

kegg
ID rcu:RCOM_0145330
description hypothetical protein
nr
ID XP_002533928.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T6Q9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0145330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_500 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000893_030 0.1416120705 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
3 Hb_009164_020 0.1913007588 - - hypothetical protein PRUPE_ppa026212mg, partial [Prunus persica]
4 Hb_005015_040 0.1938002604 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
5 Hb_009554_020 0.1951518641 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
6 Hb_057597_020 0.2105126993 - - PREDICTED: anti-H(O) lectin-like [Gossypium raimondii]
7 Hb_000019_090 0.2109214965 - - PREDICTED: thioredoxin H4-1-like [Jatropha curcas]
8 Hb_123304_010 0.217341963 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
9 Hb_001396_060 0.2175564036 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007970_030 0.2200384345 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
11 Hb_182291_020 0.2214792626 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
12 Hb_000116_340 0.2231698891 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
13 Hb_148146_030 0.2249301623 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
14 Hb_003767_020 0.2360193206 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
15 Hb_000069_250 0.238222326 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
16 Hb_136620_010 0.2403369364 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
17 Hb_000160_340 0.2411460523 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_001829_030 0.2454194184 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
19 Hb_000206_080 0.2505465451 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
20 Hb_002893_140 0.2506215089 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000172_500 Hb_000172_500 Hb_000893_030 Hb_000893_030 Hb_000172_500--Hb_000893_030 Hb_009164_020 Hb_009164_020 Hb_000172_500--Hb_009164_020 Hb_005015_040 Hb_005015_040 Hb_000172_500--Hb_005015_040 Hb_009554_020 Hb_009554_020 Hb_000172_500--Hb_009554_020 Hb_057597_020 Hb_057597_020 Hb_000172_500--Hb_057597_020 Hb_000019_090 Hb_000019_090 Hb_000172_500--Hb_000019_090 Hb_123304_010 Hb_123304_010 Hb_000893_030--Hb_123304_010 Hb_000893_030--Hb_009164_020 Hb_000701_070 Hb_000701_070 Hb_000893_030--Hb_000701_070 Hb_003767_020 Hb_003767_020 Hb_000893_030--Hb_003767_020 Hb_000116_340 Hb_000116_340 Hb_000893_030--Hb_000116_340 Hb_003780_040 Hb_003780_040 Hb_009164_020--Hb_003780_040 Hb_009164_020--Hb_123304_010 Hb_038601_010 Hb_038601_010 Hb_009164_020--Hb_038601_010 Hb_154114_020 Hb_154114_020 Hb_009164_020--Hb_154114_020 Hb_005015_040--Hb_009554_020 Hb_148146_030 Hb_148146_030 Hb_005015_040--Hb_148146_030 Hb_136620_010 Hb_136620_010 Hb_005015_040--Hb_136620_010 Hb_007970_030 Hb_007970_030 Hb_005015_040--Hb_007970_030 Hb_182291_020 Hb_182291_020 Hb_005015_040--Hb_182291_020 Hb_000206_080 Hb_000206_080 Hb_005015_040--Hb_000206_080 Hb_009554_020--Hb_007970_030 Hb_009554_020--Hb_182291_020 Hb_009554_020--Hb_000116_340 Hb_009554_020--Hb_003767_020 Hb_000160_340 Hb_000160_340 Hb_009554_020--Hb_000160_340 Hb_057597_020--Hb_000019_090 Hb_001396_060 Hb_001396_060 Hb_057597_020--Hb_001396_060 Hb_001829_030 Hb_001829_030 Hb_057597_020--Hb_001829_030 Hb_008147_110 Hb_008147_110 Hb_057597_020--Hb_008147_110 Hb_105478_010 Hb_105478_010 Hb_057597_020--Hb_105478_010 Hb_000019_090--Hb_001396_060 Hb_000019_090--Hb_001829_030 Hb_000019_090--Hb_008147_110 Hb_000019_090--Hb_105478_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.48551 24.537 0 0 2.08372
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis