Hb_105478_010

Information

Type -
Description -
Location Contig105478: 977-2570
Sequence    

Annotation

kegg
ID tcc:TCM_039262
description Gag protease polyprotein
nr
ID XP_012435466.1
description PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105478_010 0.0 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
2 Hb_008147_110 0.0214723833 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
3 Hb_001829_030 0.0675761412 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
4 Hb_003053_040 0.0982383007 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
5 Hb_003462_130 0.1153400031 - - -
6 Hb_005357_190 0.1357844487 - - Protein COBRA precursor, putative [Ricinus communis]
7 Hb_001217_030 0.1366408339 - - -
8 Hb_001396_060 0.1395959449 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000019_090 0.1763116032 - - PREDICTED: thioredoxin H4-1-like [Jatropha curcas]
10 Hb_003494_250 0.1784895389 - - -
11 Hb_057597_020 0.181033444 - - PREDICTED: anti-H(O) lectin-like [Gossypium raimondii]
12 Hb_011781_050 0.2178753369 - - -
13 Hb_183612_020 0.2224245047 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
14 Hb_002307_060 0.2309452294 - - -
15 Hb_000290_010 0.2338582036 - - -
16 Hb_000089_230 0.2485407327 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
17 Hb_003384_050 0.2496019998 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_007223_020 0.2541915973 - - PREDICTED: probable inorganic phosphate transporter 1-3 [Jatropha curcas]
19 Hb_002805_080 0.2553685591 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
20 Hb_000105_090 0.2570864906 - - -

Gene co-expression network

sample Hb_105478_010 Hb_105478_010 Hb_008147_110 Hb_008147_110 Hb_105478_010--Hb_008147_110 Hb_001829_030 Hb_001829_030 Hb_105478_010--Hb_001829_030 Hb_003053_040 Hb_003053_040 Hb_105478_010--Hb_003053_040 Hb_003462_130 Hb_003462_130 Hb_105478_010--Hb_003462_130 Hb_005357_190 Hb_005357_190 Hb_105478_010--Hb_005357_190 Hb_001217_030 Hb_001217_030 Hb_105478_010--Hb_001217_030 Hb_008147_110--Hb_001829_030 Hb_001396_060 Hb_001396_060 Hb_008147_110--Hb_001396_060 Hb_008147_110--Hb_003053_040 Hb_008147_110--Hb_003462_130 Hb_000019_090 Hb_000019_090 Hb_008147_110--Hb_000019_090 Hb_001829_030--Hb_001396_060 Hb_001829_030--Hb_000019_090 Hb_057597_020 Hb_057597_020 Hb_001829_030--Hb_057597_020 Hb_001829_030--Hb_003053_040 Hb_003053_040--Hb_003462_130 Hb_003053_040--Hb_005357_190 Hb_003053_040--Hb_001217_030 Hb_003494_250 Hb_003494_250 Hb_003053_040--Hb_003494_250 Hb_003462_130--Hb_005357_190 Hb_003462_130--Hb_001217_030 Hb_003462_130--Hb_003494_250 Hb_011781_050 Hb_011781_050 Hb_003462_130--Hb_011781_050 Hb_005357_190--Hb_001217_030 Hb_005357_190--Hb_003494_250 Hb_005357_190--Hb_011781_050 Hb_002307_060 Hb_002307_060 Hb_005357_190--Hb_002307_060 Hb_001217_030--Hb_003494_250 Hb_001217_030--Hb_011781_050 Hb_001217_030--Hb_002307_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0437015 0 0 0.0141826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis