Hb_003462_130

Information

Type -
Description -
Location Contig3462: 141097-142379
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003462_130 0.0 - - -
2 Hb_003053_040 0.0171891432 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
3 Hb_005357_190 0.020583636 - - Protein COBRA precursor, putative [Ricinus communis]
4 Hb_001217_030 0.0214466467 - - -
5 Hb_003494_250 0.0636930467 - - -
6 Hb_011781_050 0.1035779843 - - -
7 Hb_105478_010 0.1153400031 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
8 Hb_002307_060 0.1168388038 - - -
9 Hb_000290_010 0.1197960055 - - -
10 Hb_000089_230 0.1347106482 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
11 Hb_003384_050 0.1357892836 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_008147_110 0.1366372387 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
13 Hb_002805_080 0.1416516009 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
14 Hb_000105_090 0.1433985113 - - -
15 Hb_001631_120 0.1446410712 - - unnamed protein product [Vitis vinifera]
16 Hb_000705_310 0.1456461609 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
17 Hb_001829_030 0.1821348695 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
18 Hb_004021_110 0.2105755733 - - -
19 Hb_001032_040 0.2268699871 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
20 Hb_001396_060 0.2524572191 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003462_130 Hb_003462_130 Hb_003053_040 Hb_003053_040 Hb_003462_130--Hb_003053_040 Hb_005357_190 Hb_005357_190 Hb_003462_130--Hb_005357_190 Hb_001217_030 Hb_001217_030 Hb_003462_130--Hb_001217_030 Hb_003494_250 Hb_003494_250 Hb_003462_130--Hb_003494_250 Hb_011781_050 Hb_011781_050 Hb_003462_130--Hb_011781_050 Hb_105478_010 Hb_105478_010 Hb_003462_130--Hb_105478_010 Hb_003053_040--Hb_005357_190 Hb_003053_040--Hb_001217_030 Hb_003053_040--Hb_003494_250 Hb_003053_040--Hb_105478_010 Hb_008147_110 Hb_008147_110 Hb_003053_040--Hb_008147_110 Hb_005357_190--Hb_001217_030 Hb_005357_190--Hb_003494_250 Hb_005357_190--Hb_011781_050 Hb_002307_060 Hb_002307_060 Hb_005357_190--Hb_002307_060 Hb_001217_030--Hb_003494_250 Hb_001217_030--Hb_011781_050 Hb_001217_030--Hb_002307_060 Hb_003494_250--Hb_011781_050 Hb_003494_250--Hb_002307_060 Hb_000290_010 Hb_000290_010 Hb_003494_250--Hb_000290_010 Hb_011781_050--Hb_002307_060 Hb_011781_050--Hb_000290_010 Hb_000089_230 Hb_000089_230 Hb_011781_050--Hb_000089_230 Hb_003384_050 Hb_003384_050 Hb_011781_050--Hb_003384_050 Hb_002805_080 Hb_002805_080 Hb_011781_050--Hb_002805_080 Hb_105478_010--Hb_008147_110 Hb_001829_030 Hb_001829_030 Hb_105478_010--Hb_001829_030 Hb_105478_010--Hb_005357_190 Hb_105478_010--Hb_001217_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0415464 0 0 0.0244029
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis