Hb_001217_030

Information

Type -
Description -
Location Contig1217: 26333-26707
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06600: 20599-89930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001217_030 0.0 - - -
2 Hb_005357_190 0.0008631573 - - Protein COBRA precursor, putative [Ricinus communis]
3 Hb_003462_130 0.0214466467 - - -
4 Hb_003053_040 0.0386301579 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
5 Hb_003494_250 0.0422679908 - - -
6 Hb_011781_050 0.0821981269 - - -
7 Hb_002307_060 0.0954791027 - - -
8 Hb_000290_010 0.0984411427 - - -
9 Hb_000089_230 0.1133820831 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
10 Hb_003384_050 0.1144627428 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002805_080 0.1203363493 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
12 Hb_000105_090 0.1220867177 - - -
13 Hb_001631_120 0.1233317636 - - unnamed protein product [Vitis vinifera]
14 Hb_000705_310 0.12433888 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
15 Hb_105478_010 0.1366408339 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
16 Hb_008147_110 0.1578799662 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
17 Hb_004021_110 0.1894294978 - - -
18 Hb_001829_030 0.2032141517 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
19 Hb_001032_040 0.2136973341 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
20 Hb_101393_010 0.2452212224 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001217_030 Hb_001217_030 Hb_005357_190 Hb_005357_190 Hb_001217_030--Hb_005357_190 Hb_003462_130 Hb_003462_130 Hb_001217_030--Hb_003462_130 Hb_003053_040 Hb_003053_040 Hb_001217_030--Hb_003053_040 Hb_003494_250 Hb_003494_250 Hb_001217_030--Hb_003494_250 Hb_011781_050 Hb_011781_050 Hb_001217_030--Hb_011781_050 Hb_002307_060 Hb_002307_060 Hb_001217_030--Hb_002307_060 Hb_005357_190--Hb_003462_130 Hb_005357_190--Hb_003053_040 Hb_005357_190--Hb_003494_250 Hb_005357_190--Hb_011781_050 Hb_005357_190--Hb_002307_060 Hb_003462_130--Hb_003053_040 Hb_003462_130--Hb_003494_250 Hb_003462_130--Hb_011781_050 Hb_105478_010 Hb_105478_010 Hb_003462_130--Hb_105478_010 Hb_003053_040--Hb_003494_250 Hb_003053_040--Hb_105478_010 Hb_008147_110 Hb_008147_110 Hb_003053_040--Hb_008147_110 Hb_003494_250--Hb_011781_050 Hb_003494_250--Hb_002307_060 Hb_000290_010 Hb_000290_010 Hb_003494_250--Hb_000290_010 Hb_011781_050--Hb_002307_060 Hb_011781_050--Hb_000290_010 Hb_000089_230 Hb_000089_230 Hb_011781_050--Hb_000089_230 Hb_003384_050 Hb_003384_050 Hb_011781_050--Hb_003384_050 Hb_002805_080 Hb_002805_080 Hb_011781_050--Hb_002805_080 Hb_002307_060--Hb_000290_010 Hb_002307_060--Hb_000089_230 Hb_002307_060--Hb_003384_050 Hb_002307_060--Hb_002805_080 Hb_000105_090 Hb_000105_090 Hb_002307_060--Hb_000105_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.401609 0 0 0.261731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis