Hb_003384_050

Information

Type -
Description -
Location Contig3384: 90598-95357
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003384_050 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_000089_230 0.0010855544 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
3 Hb_002805_080 0.0059018312 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
4 Hb_000105_090 0.0076611407 - - -
5 Hb_001631_120 0.0089126948 - - unnamed protein product [Vitis vinifera]
6 Hb_000705_310 0.0099251659 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
7 Hb_000290_010 0.016084682 - - -
8 Hb_002307_060 0.0190561578 - - -
9 Hb_011781_050 0.0323708992 - - -
10 Hb_003494_250 0.0723179787 - - -
11 Hb_004021_110 0.075535505 - - -
12 Hb_001217_030 0.1144627428 - - -
13 Hb_005357_190 0.1153218293 - - Protein COBRA precursor, putative [Ricinus communis]
14 Hb_003462_130 0.1357892836 - - -
15 Hb_001486_110 0.1514775619 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
16 Hb_003053_040 0.1528474776 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
17 Hb_001032_040 0.1719686673 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
18 Hb_131621_010 0.1995017365 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
19 Hb_101393_010 0.2211175609 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007765_090 0.2236618591 - - unknown [Glycine max]

Gene co-expression network

sample Hb_003384_050 Hb_003384_050 Hb_000089_230 Hb_000089_230 Hb_003384_050--Hb_000089_230 Hb_002805_080 Hb_002805_080 Hb_003384_050--Hb_002805_080 Hb_000105_090 Hb_000105_090 Hb_003384_050--Hb_000105_090 Hb_001631_120 Hb_001631_120 Hb_003384_050--Hb_001631_120 Hb_000705_310 Hb_000705_310 Hb_003384_050--Hb_000705_310 Hb_000290_010 Hb_000290_010 Hb_003384_050--Hb_000290_010 Hb_000089_230--Hb_002805_080 Hb_000089_230--Hb_000105_090 Hb_000089_230--Hb_001631_120 Hb_000089_230--Hb_000705_310 Hb_000089_230--Hb_000290_010 Hb_002805_080--Hb_000105_090 Hb_002805_080--Hb_001631_120 Hb_002805_080--Hb_000705_310 Hb_002805_080--Hb_000290_010 Hb_000105_090--Hb_001631_120 Hb_000105_090--Hb_000705_310 Hb_000105_090--Hb_000290_010 Hb_001631_120--Hb_000705_310 Hb_001631_120--Hb_000290_010 Hb_000705_310--Hb_000290_010 Hb_002307_060 Hb_002307_060 Hb_000290_010--Hb_002307_060 Hb_011781_050 Hb_011781_050 Hb_000290_010--Hb_011781_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00352232 0 0 0.00395177
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis