Hb_001631_120

Information

Type -
Description -
Location Contig1631: 117556-119092
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06200g
description POPTRDRAFT_562662; pentatricopeptide repeat-containing family protein
nr
ID CBI21484.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9SHZ8
description Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1
trembl
ID A0A067KG88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14857: 113849-116585
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001631_120 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000705_310 0.0010125025 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
3 Hb_000105_090 0.001251584 - - -
4 Hb_002805_080 0.003010919 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
5 Hb_003384_050 0.0089126948 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000089_230 0.0099982154 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
7 Hb_000290_010 0.0249961282 - - -
8 Hb_002307_060 0.0279671983 - - -
9 Hb_011781_050 0.0412794537 - - -
10 Hb_004021_110 0.0666388412 - - -
11 Hb_003494_250 0.0812125278 - - -
12 Hb_001217_030 0.1233317636 - - -
13 Hb_005357_190 0.1241902128 - - Protein COBRA precursor, putative [Ricinus communis]
14 Hb_001486_110 0.142636221 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
15 Hb_003462_130 0.1446410712 - - -
16 Hb_003053_040 0.1616833281 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
17 Hb_001032_040 0.1714231134 - - PREDICTED: psbP-like protein 1, chloroplastic [Jatropha curcas]
18 Hb_131621_010 0.1907185115 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
19 Hb_007765_090 0.2149155393 - - unknown [Glycine max]
20 Hb_043999_010 0.2167472952 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]

Gene co-expression network

sample Hb_001631_120 Hb_001631_120 Hb_000705_310 Hb_000705_310 Hb_001631_120--Hb_000705_310 Hb_000105_090 Hb_000105_090 Hb_001631_120--Hb_000105_090 Hb_002805_080 Hb_002805_080 Hb_001631_120--Hb_002805_080 Hb_003384_050 Hb_003384_050 Hb_001631_120--Hb_003384_050 Hb_000089_230 Hb_000089_230 Hb_001631_120--Hb_000089_230 Hb_000290_010 Hb_000290_010 Hb_001631_120--Hb_000290_010 Hb_000705_310--Hb_000105_090 Hb_000705_310--Hb_002805_080 Hb_000705_310--Hb_003384_050 Hb_000705_310--Hb_000089_230 Hb_000705_310--Hb_000290_010 Hb_000105_090--Hb_002805_080 Hb_000105_090--Hb_003384_050 Hb_000105_090--Hb_000089_230 Hb_000105_090--Hb_000290_010 Hb_002805_080--Hb_003384_050 Hb_002805_080--Hb_000089_230 Hb_002805_080--Hb_000290_010 Hb_003384_050--Hb_000089_230 Hb_003384_050--Hb_000290_010 Hb_000089_230--Hb_000290_010 Hb_002307_060 Hb_002307_060 Hb_000290_010--Hb_002307_060 Hb_011781_050 Hb_011781_050 Hb_000290_010--Hb_011781_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0341303 0 0 0.039937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis