Hb_003780_040

Information

Type -
Description -
Location Contig3780: 43137-47197
Sequence    

Annotation

kegg
ID cit:102623944
description putative ribonuclease H protein At1g65750-like
nr
ID XP_006480844.1
description PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID O82276
description Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g31080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003780_040 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
2 Hb_009164_020 0.1993594887 - - hypothetical protein PRUPE_ppa026212mg, partial [Prunus persica]
3 Hb_000340_070 0.2275926914 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
4 Hb_000604_080 0.22963973 - - Fgenesh protein [Medicago truncatula]
5 Hb_000574_270 0.2394455993 - - PREDICTED: VQ motif-containing protein 11 [Jatropha curcas]
6 Hb_000170_080 0.2409450385 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
7 Hb_000668_120 0.2426569511 - - hypothetical protein JCGZ_11991 [Jatropha curcas]
8 Hb_006478_140 0.2433802017 - - PREDICTED: vicilin-like antimicrobial peptides 2-2 [Jatropha curcas]
9 Hb_150745_010 0.247828067 - - hypothetical protein JCGZ_17337 [Jatropha curcas]
10 Hb_000483_050 0.2489151215 - - PREDICTED: vacuolar amino acid transporter 1-like [Jatropha curcas]
11 Hb_011224_090 0.2543868 - - PREDICTED: ABC transporter G family member 26 [Jatropha curcas]
12 Hb_000953_180 0.2547898259 - - -
13 Hb_000365_110 0.2549112481 transcription factor TF Family: GRAS PREDICTED: protein SCARECROW [Jatropha curcas]
14 Hb_002874_210 0.2556809454 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011622_010 0.2567653154 - - PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
16 Hb_127372_010 0.2578017833 - - hypothetical protein POPTR_0017s06310g [Populus trichocarpa]
17 Hb_005375_060 0.2594017991 - - PREDICTED: probably inactive receptor-like protein kinase At2g46850 [Jatropha curcas]
18 Hb_007101_250 0.2618738943 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 2 [Jatropha curcas]
19 Hb_002435_010 0.2671389677 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
20 Hb_007163_080 0.2676427023 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP] [Jatropha curcas]

Gene co-expression network

sample Hb_003780_040 Hb_003780_040 Hb_009164_020 Hb_009164_020 Hb_003780_040--Hb_009164_020 Hb_000340_070 Hb_000340_070 Hb_003780_040--Hb_000340_070 Hb_000604_080 Hb_000604_080 Hb_003780_040--Hb_000604_080 Hb_000574_270 Hb_000574_270 Hb_003780_040--Hb_000574_270 Hb_000170_080 Hb_000170_080 Hb_003780_040--Hb_000170_080 Hb_000668_120 Hb_000668_120 Hb_003780_040--Hb_000668_120 Hb_000893_030 Hb_000893_030 Hb_009164_020--Hb_000893_030 Hb_000172_500 Hb_000172_500 Hb_009164_020--Hb_000172_500 Hb_123304_010 Hb_123304_010 Hb_009164_020--Hb_123304_010 Hb_038601_010 Hb_038601_010 Hb_009164_020--Hb_038601_010 Hb_154114_020 Hb_154114_020 Hb_009164_020--Hb_154114_020 Hb_002534_040 Hb_002534_040 Hb_000340_070--Hb_002534_040 Hb_000340_070--Hb_000604_080 Hb_002435_010 Hb_002435_010 Hb_000340_070--Hb_002435_010 Hb_000340_070--Hb_000574_270 Hb_150745_010 Hb_150745_010 Hb_000340_070--Hb_150745_010 Hb_000668_190 Hb_000668_190 Hb_000340_070--Hb_000668_190 Hb_006478_140 Hb_006478_140 Hb_000604_080--Hb_006478_140 Hb_127372_010 Hb_127372_010 Hb_000604_080--Hb_127372_010 Hb_000604_080--Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_000604_080--Hb_002435_070 Hb_004725_040 Hb_004725_040 Hb_000604_080--Hb_004725_040 Hb_000365_110 Hb_000365_110 Hb_000574_270--Hb_000365_110 Hb_000953_180 Hb_000953_180 Hb_000574_270--Hb_000953_180 Hb_000483_050 Hb_000483_050 Hb_000574_270--Hb_000483_050 Hb_000574_270--Hb_150745_010 Hb_000192_030 Hb_000192_030 Hb_000574_270--Hb_000192_030 Hb_000413_220 Hb_000413_220 Hb_000574_270--Hb_000413_220 Hb_000215_150 Hb_000215_150 Hb_000170_080--Hb_000215_150 Hb_007919_070 Hb_007919_070 Hb_000170_080--Hb_007919_070 Hb_001007_090 Hb_001007_090 Hb_000170_080--Hb_001007_090 Hb_003935_050 Hb_003935_050 Hb_000170_080--Hb_003935_050 Hb_000140_250 Hb_000140_250 Hb_000170_080--Hb_000140_250 Hb_000000_130 Hb_000000_130 Hb_000170_080--Hb_000000_130 Hb_011224_090 Hb_011224_090 Hb_000668_120--Hb_011224_090 Hb_007879_010 Hb_007879_010 Hb_000668_120--Hb_007879_010 Hb_183612_020 Hb_183612_020 Hb_000668_120--Hb_183612_020 Hb_000668_120--Hb_009164_020 Hb_059295_010 Hb_059295_010 Hb_000668_120--Hb_059295_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0122416 0.0413286 0.00469277 0 0.00628447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00478305 0

CAGE analysis