Hb_059295_010

Information

Type -
Description -
Location Contig59295: 1-324
Sequence    

Annotation

kegg
ID cic:CICLE_v10032980mg
description hypothetical protein
nr
ID XP_006436068.1
description hypothetical protein CICLE_v10032980mg [Citrus clementina]
swissprot
ID O22644
description 60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1
trembl
ID V4SNE2
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032980mg PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l23a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_059295_010 0.0 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
2 Hb_183612_020 0.1877018287 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
3 Hb_000574_520 0.1877773053 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
4 Hb_000069_400 0.2387601156 - - RING-H2 finger protein ATL3K, putative [Ricinus communis]
5 Hb_001829_030 0.2526219567 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
6 Hb_008147_110 0.2580093765 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
7 Hb_001396_060 0.2599157175 - - conserved hypothetical protein [Ricinus communis]
8 Hb_141199_010 0.2622013591 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_007416_380 0.2628284792 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
10 Hb_105478_010 0.2630427523 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
11 Hb_002450_150 0.2642518237 - - ATP binding protein, putative [Ricinus communis]
12 Hb_000668_120 0.2649323244 - - hypothetical protein JCGZ_11991 [Jatropha curcas]
13 Hb_000019_090 0.2708518507 - - PREDICTED: thioredoxin H4-1-like [Jatropha curcas]
14 Hb_057597_020 0.272588524 - - PREDICTED: anti-H(O) lectin-like [Gossypium raimondii]
15 Hb_005181_020 0.2785341074 - - Pectinesterase-2 precursor, putative [Ricinus communis]
16 Hb_000069_390 0.2789053786 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
17 Hb_007223_020 0.2844649416 - - PREDICTED: probable inorganic phosphate transporter 1-3 [Jatropha curcas]
18 Hb_002307_040 0.2871688761 - - DNA binding protein, putative [Ricinus communis]
19 Hb_004449_160 0.2913637558 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_011224_090 0.2950033051 - - PREDICTED: ABC transporter G family member 26 [Jatropha curcas]

Gene co-expression network

sample Hb_059295_010 Hb_059295_010 Hb_183612_020 Hb_183612_020 Hb_059295_010--Hb_183612_020 Hb_000574_520 Hb_000574_520 Hb_059295_010--Hb_000574_520 Hb_000069_400 Hb_000069_400 Hb_059295_010--Hb_000069_400 Hb_001829_030 Hb_001829_030 Hb_059295_010--Hb_001829_030 Hb_008147_110 Hb_008147_110 Hb_059295_010--Hb_008147_110 Hb_001396_060 Hb_001396_060 Hb_059295_010--Hb_001396_060 Hb_183612_020--Hb_000574_520 Hb_002450_150 Hb_002450_150 Hb_183612_020--Hb_002450_150 Hb_007416_380 Hb_007416_380 Hb_183612_020--Hb_007416_380 Hb_141199_010 Hb_141199_010 Hb_183612_020--Hb_141199_010 Hb_183612_020--Hb_001829_030 Hb_000574_520--Hb_007416_380 Hb_000069_390 Hb_000069_390 Hb_000574_520--Hb_000069_390 Hb_000574_520--Hb_002450_150 Hb_000574_520--Hb_141199_010 Hb_005181_020 Hb_005181_020 Hb_000574_520--Hb_005181_020 Hb_004449_160 Hb_004449_160 Hb_000069_400--Hb_004449_160 Hb_001279_050 Hb_001279_050 Hb_000069_400--Hb_001279_050 Hb_002307_040 Hb_002307_040 Hb_000069_400--Hb_002307_040 Hb_007120_020 Hb_007120_020 Hb_000069_400--Hb_007120_020 Hb_000748_100 Hb_000748_100 Hb_000069_400--Hb_000748_100 Hb_171646_010 Hb_171646_010 Hb_000069_400--Hb_171646_010 Hb_001829_030--Hb_008147_110 Hb_105478_010 Hb_105478_010 Hb_001829_030--Hb_105478_010 Hb_001829_030--Hb_001396_060 Hb_000019_090 Hb_000019_090 Hb_001829_030--Hb_000019_090 Hb_057597_020 Hb_057597_020 Hb_001829_030--Hb_057597_020 Hb_003053_040 Hb_003053_040 Hb_001829_030--Hb_003053_040 Hb_008147_110--Hb_105478_010 Hb_008147_110--Hb_001396_060 Hb_008147_110--Hb_003053_040 Hb_003462_130 Hb_003462_130 Hb_008147_110--Hb_003462_130 Hb_008147_110--Hb_000019_090 Hb_001396_060--Hb_000019_090 Hb_001396_060--Hb_057597_020 Hb_001396_060--Hb_105478_010 Hb_001396_060--Hb_183612_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.962717 0.264028 13.5571 0.70985 0 2.81722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.334141 0

CAGE analysis