Hb_000574_520

Information

Type -
Description -
Location Contig574: 450288-452992
Sequence    

Annotation

kegg
ID rcu:RCOM_0900820
description hypothetical protein
nr
ID XP_012073162.1
description PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
swissprot
ID Q84WS8
description U11/U12 small nuclear ribonucleoprotein 25 kDa protein OS=Arabidopsis thaliana GN=SNRNP25 PE=2 SV=1
trembl
ID A0A067KYZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06125 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49604: 450223-452345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000574_520 0.0 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
2 Hb_007416_380 0.1089357732 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
3 Hb_000069_390 0.1214222537 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
4 Hb_183612_020 0.1234487519 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
5 Hb_002450_150 0.1511523748 - - ATP binding protein, putative [Ricinus communis]
6 Hb_141199_010 0.1549703594 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_005181_020 0.1871104861 - - Pectinesterase-2 precursor, putative [Ricinus communis]
8 Hb_059295_010 0.1877773053 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
9 Hb_004449_160 0.1932047765 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
10 Hb_000069_400 0.2071844826 - - RING-H2 finger protein ATL3K, putative [Ricinus communis]
11 Hb_000429_210 0.214862364 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
12 Hb_171646_010 0.2188752636 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
13 Hb_000975_140 0.2373785991 - - lactoylglutathione lyase family protein [Populus trichocarpa]
14 Hb_011224_090 0.247944094 - - PREDICTED: ABC transporter G family member 26 [Jatropha curcas]
15 Hb_000077_430 0.2485434335 - - hypothetical protein POPTR_0019s13390g [Populus trichocarpa]
16 Hb_032223_010 0.2495554072 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
17 Hb_000227_010 0.2496282446 - - hypothetical protein JCGZ_02114 [Jatropha curcas]
18 Hb_001396_060 0.2504616434 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002110_070 0.2524026857 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
20 Hb_000019_090 0.2529511701 - - PREDICTED: thioredoxin H4-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000574_520 Hb_000574_520 Hb_007416_380 Hb_007416_380 Hb_000574_520--Hb_007416_380 Hb_000069_390 Hb_000069_390 Hb_000574_520--Hb_000069_390 Hb_183612_020 Hb_183612_020 Hb_000574_520--Hb_183612_020 Hb_002450_150 Hb_002450_150 Hb_000574_520--Hb_002450_150 Hb_141199_010 Hb_141199_010 Hb_000574_520--Hb_141199_010 Hb_005181_020 Hb_005181_020 Hb_000574_520--Hb_005181_020 Hb_007416_380--Hb_000069_390 Hb_007416_380--Hb_141199_010 Hb_007416_380--Hb_005181_020 Hb_007416_380--Hb_183612_020 Hb_007416_380--Hb_002450_150 Hb_000069_390--Hb_141199_010 Hb_000069_390--Hb_005181_020 Hb_004449_160 Hb_004449_160 Hb_000069_390--Hb_004449_160 Hb_000069_390--Hb_002450_150 Hb_183612_020--Hb_002450_150 Hb_059295_010 Hb_059295_010 Hb_183612_020--Hb_059295_010 Hb_183612_020--Hb_141199_010 Hb_001829_030 Hb_001829_030 Hb_183612_020--Hb_001829_030 Hb_002450_150--Hb_141199_010 Hb_000000_040 Hb_000000_040 Hb_002450_150--Hb_000000_040 Hb_141199_010--Hb_005181_020 Hb_007904_050 Hb_007904_050 Hb_141199_010--Hb_007904_050 Hb_005181_020--Hb_007904_050 Hb_115823_010 Hb_115823_010 Hb_005181_020--Hb_115823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0281834 0 2.86569 0.373593 0 0.384789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0412054 0

CAGE analysis