Hb_000069_390

Information

Type -
Description -
Location Contig69: 418956-422931
Sequence    

Annotation

kegg
ID rcu:RCOM_0718460
description hypothetical protein
nr
ID XP_012083216.1
description PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
swissprot
ID Q9M365
description Probable F-box protein At3g61730 OS=Arabidopsis thaliana GN=RMF PE=1 SV=2
trembl
ID A0A067K0A5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14264 PE=4 SV=1
Gene Ontology
ID GO:0008270
description probable f-box protein at3g61730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54234: 417953-418296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000069_390 0.0 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
2 Hb_007416_380 0.0295003856 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
3 Hb_000574_520 0.1214222537 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
4 Hb_141199_010 0.1366540704 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_005181_020 0.1728980012 - - Pectinesterase-2 precursor, putative [Ricinus communis]
6 Hb_004449_160 0.1785740053 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002450_150 0.1871774373 - - ATP binding protein, putative [Ricinus communis]
8 Hb_171646_010 0.1915196393 - - hypothetical protein B456_012G144300, partial [Gossypium raimondii]
9 Hb_000107_670 0.1963480053 transcription factor TF Family: MIKC floral homeotic protein AGAMOUS [Jatropha curcas]
10 Hb_004117_070 0.2022243328 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
11 Hb_030385_030 0.2023205678 - - PREDICTED: B3 domain-containing protein At3g19184 isoform X1 [Jatropha curcas]
12 Hb_011179_010 0.2024745076 transcription factor TF Family: ERF hypothetical protein JCGZ_14625 [Jatropha curcas]
13 Hb_001926_050 0.2025472932 - - PREDICTED: peroxidase 19 [Jatropha curcas]
14 Hb_000173_040 0.2028799971 - - putative xylanase inhibitor, partial [Triticum aestivum]
15 Hb_154114_040 0.2029386913 - - hypothetical protein B456_001G056600 [Gossypium raimondii]
16 Hb_000193_040 0.203172232 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
17 Hb_183612_020 0.2032172968 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
18 Hb_004722_050 0.2033681521 - - hypothetical protein POPTR_0011s02010g [Populus trichocarpa]
19 Hb_022862_010 0.2033786914 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 6 [Jatropha curcas]
20 Hb_000769_040 0.2038148394 - - hypothetical protein VITISV_028082 [Vitis vinifera]

Gene co-expression network

sample Hb_000069_390 Hb_000069_390 Hb_007416_380 Hb_007416_380 Hb_000069_390--Hb_007416_380 Hb_000574_520 Hb_000574_520 Hb_000069_390--Hb_000574_520 Hb_141199_010 Hb_141199_010 Hb_000069_390--Hb_141199_010 Hb_005181_020 Hb_005181_020 Hb_000069_390--Hb_005181_020 Hb_004449_160 Hb_004449_160 Hb_000069_390--Hb_004449_160 Hb_002450_150 Hb_002450_150 Hb_000069_390--Hb_002450_150 Hb_007416_380--Hb_000574_520 Hb_007416_380--Hb_141199_010 Hb_007416_380--Hb_005181_020 Hb_183612_020 Hb_183612_020 Hb_007416_380--Hb_183612_020 Hb_007416_380--Hb_002450_150 Hb_000574_520--Hb_183612_020 Hb_000574_520--Hb_002450_150 Hb_000574_520--Hb_141199_010 Hb_000574_520--Hb_005181_020 Hb_141199_010--Hb_005181_020 Hb_007904_050 Hb_007904_050 Hb_141199_010--Hb_007904_050 Hb_141199_010--Hb_183612_020 Hb_005181_020--Hb_007904_050 Hb_115823_010 Hb_115823_010 Hb_005181_020--Hb_115823_010 Hb_004800_030 Hb_004800_030 Hb_004449_160--Hb_004800_030 Hb_074660_010 Hb_074660_010 Hb_004449_160--Hb_074660_010 Hb_171646_010 Hb_171646_010 Hb_004449_160--Hb_171646_010 Hb_169136_010 Hb_169136_010 Hb_004449_160--Hb_169136_010 Hb_000069_400 Hb_000069_400 Hb_004449_160--Hb_000069_400 Hb_000748_100 Hb_000748_100 Hb_004449_160--Hb_000748_100 Hb_002450_150--Hb_183612_020 Hb_002450_150--Hb_141199_010 Hb_000000_040 Hb_000000_040 Hb_002450_150--Hb_000000_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.186123 0.0376799 0 0.0192982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis