Hb_002450_150

Information

Type -
Description -
Location Contig2450: 98595-101518
Sequence    

Annotation

kegg
ID rcu:RCOM_1496780
description ATP binding protein, putative
nr
ID XP_002510829.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID O80844
description Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1
trembl
ID B9R9F4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1496780 PE=4 SV=1
Gene Ontology
ID GO:0008168
description probable methyltransferase pmt16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_150 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_000574_520 0.1511523748 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
3 Hb_183612_020 0.1613521475 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
4 Hb_007416_380 0.1851248101 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
5 Hb_000069_390 0.1871774373 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
6 Hb_141199_010 0.2153512142 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000000_040 0.2196153243 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Jatropha curcas]
8 Hb_008725_110 0.2222750729 - - PREDICTED: leucine-rich repeat extensin-like protein 1 [Jatropha curcas]
9 Hb_011224_090 0.2266566092 - - PREDICTED: ABC transporter G family member 26 [Jatropha curcas]
10 Hb_020273_020 0.2273561841 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_005066_050 0.2276021071 - - -
12 Hb_006120_140 0.2329685271 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
13 Hb_005181_020 0.2365095572 - - Pectinesterase-2 precursor, putative [Ricinus communis]
14 Hb_000621_100 0.2415641099 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004449_160 0.24201519 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000321_040 0.2427528321 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
17 Hb_000025_770 0.2434314585 - - PREDICTED: sugar transport protein 14-like [Jatropha curcas]
18 Hb_061361_010 0.2460495765 - - kinase, putative [Ricinus communis]
19 Hb_002110_070 0.2467889739 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
20 Hb_001235_040 0.2487399555 - - hypothetical protein POPTR_0001s47470g [Populus trichocarpa]

Gene co-expression network

sample Hb_002450_150 Hb_002450_150 Hb_000574_520 Hb_000574_520 Hb_002450_150--Hb_000574_520 Hb_183612_020 Hb_183612_020 Hb_002450_150--Hb_183612_020 Hb_007416_380 Hb_007416_380 Hb_002450_150--Hb_007416_380 Hb_000069_390 Hb_000069_390 Hb_002450_150--Hb_000069_390 Hb_141199_010 Hb_141199_010 Hb_002450_150--Hb_141199_010 Hb_000000_040 Hb_000000_040 Hb_002450_150--Hb_000000_040 Hb_000574_520--Hb_007416_380 Hb_000574_520--Hb_000069_390 Hb_000574_520--Hb_183612_020 Hb_000574_520--Hb_141199_010 Hb_005181_020 Hb_005181_020 Hb_000574_520--Hb_005181_020 Hb_183612_020--Hb_007416_380 Hb_059295_010 Hb_059295_010 Hb_183612_020--Hb_059295_010 Hb_183612_020--Hb_141199_010 Hb_001829_030 Hb_001829_030 Hb_183612_020--Hb_001829_030 Hb_007416_380--Hb_000069_390 Hb_007416_380--Hb_141199_010 Hb_007416_380--Hb_005181_020 Hb_000069_390--Hb_141199_010 Hb_000069_390--Hb_005181_020 Hb_004449_160 Hb_004449_160 Hb_000069_390--Hb_004449_160 Hb_141199_010--Hb_005181_020 Hb_007904_050 Hb_007904_050 Hb_141199_010--Hb_007904_050 Hb_020273_020 Hb_020273_020 Hb_000000_040--Hb_020273_020 Hb_006120_140 Hb_006120_140 Hb_000000_040--Hb_006120_140 Hb_005066_050 Hb_005066_050 Hb_000000_040--Hb_005066_050 Hb_000621_100 Hb_000621_100 Hb_000000_040--Hb_000621_100 Hb_000321_040 Hb_000321_040 Hb_000000_040--Hb_000321_040 Hb_008725_110 Hb_008725_110 Hb_000000_040--Hb_008725_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0774199 0.0146637 0 0.00990687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00730574 0

CAGE analysis