Hb_000668_120

Information

Type -
Description -
Location Contig668: 96834-100129
Sequence    

Annotation

kegg
ID rcu:RCOM_1033960
description gtpase mss1/trme, putative
nr
ID KDP32699.1
description hypothetical protein JCGZ_11991 [Jatropha curcas]
swissprot
ID Q3MBM5
description tRNA modification GTPase MnmE OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=mnmE PE=3 SV=1
trembl
ID A0A067KLQ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11991 PE=3 SV=1
Gene Ontology
ID GO:0005622
description probable trna modification gtpase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000668_120 0.0 - - hypothetical protein JCGZ_11991 [Jatropha curcas]
2 Hb_011224_090 0.1402945134 - - PREDICTED: ABC transporter G family member 26 [Jatropha curcas]
3 Hb_007879_010 0.2276316936 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
4 Hb_003780_040 0.2426569511 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
5 Hb_183612_020 0.2482911492 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
6 Hb_009164_020 0.2635401673 - - hypothetical protein PRUPE_ppa026212mg, partial [Prunus persica]
7 Hb_059295_010 0.2649323244 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
8 Hb_002450_150 0.2771457102 - - ATP binding protein, putative [Ricinus communis]
9 Hb_000574_520 0.2790720213 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
10 Hb_028487_120 0.2903974583 - - PREDICTED: HMG-Y-related protein B-like [Jatropha curcas]
11 Hb_000172_500 0.2954575289 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002307_040 0.2959352117 - - DNA binding protein, putative [Ricinus communis]
13 Hb_000521_180 0.3004190393 - - PREDICTED: uncharacterized protein LOC105650335 [Jatropha curcas]
14 Hb_000069_400 0.3091211929 - - RING-H2 finger protein ATL3K, putative [Ricinus communis]
15 Hb_000893_030 0.3113430305 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
16 Hb_000653_020 0.3114012366 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15-like [Jatropha curcas]
17 Hb_007223_020 0.3116715428 - - PREDICTED: probable inorganic phosphate transporter 1-3 [Jatropha curcas]
18 Hb_005686_100 0.3118863467 - - conserved hypothetical protein [Ricinus communis]
19 Hb_123304_010 0.3130397678 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
20 Hb_007416_380 0.3132712004 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000668_120 Hb_000668_120 Hb_011224_090 Hb_011224_090 Hb_000668_120--Hb_011224_090 Hb_007879_010 Hb_007879_010 Hb_000668_120--Hb_007879_010 Hb_003780_040 Hb_003780_040 Hb_000668_120--Hb_003780_040 Hb_183612_020 Hb_183612_020 Hb_000668_120--Hb_183612_020 Hb_009164_020 Hb_009164_020 Hb_000668_120--Hb_009164_020 Hb_059295_010 Hb_059295_010 Hb_000668_120--Hb_059295_010 Hb_001318_160 Hb_001318_160 Hb_011224_090--Hb_001318_160 Hb_000261_340 Hb_000261_340 Hb_011224_090--Hb_000261_340 Hb_002450_150 Hb_002450_150 Hb_011224_090--Hb_002450_150 Hb_011224_090--Hb_007879_010 Hb_000960_120 Hb_000960_120 Hb_011224_090--Hb_000960_120 Hb_011161_030 Hb_011161_030 Hb_007879_010--Hb_011161_030 Hb_000172_490 Hb_000172_490 Hb_007879_010--Hb_000172_490 Hb_005016_180 Hb_005016_180 Hb_007879_010--Hb_005016_180 Hb_001138_030 Hb_001138_030 Hb_007879_010--Hb_001138_030 Hb_003780_040--Hb_009164_020 Hb_000340_070 Hb_000340_070 Hb_003780_040--Hb_000340_070 Hb_000604_080 Hb_000604_080 Hb_003780_040--Hb_000604_080 Hb_000574_270 Hb_000574_270 Hb_003780_040--Hb_000574_270 Hb_000170_080 Hb_000170_080 Hb_003780_040--Hb_000170_080 Hb_000574_520 Hb_000574_520 Hb_183612_020--Hb_000574_520 Hb_183612_020--Hb_002450_150 Hb_007416_380 Hb_007416_380 Hb_183612_020--Hb_007416_380 Hb_183612_020--Hb_059295_010 Hb_141199_010 Hb_141199_010 Hb_183612_020--Hb_141199_010 Hb_001829_030 Hb_001829_030 Hb_183612_020--Hb_001829_030 Hb_000893_030 Hb_000893_030 Hb_009164_020--Hb_000893_030 Hb_000172_500 Hb_000172_500 Hb_009164_020--Hb_000172_500 Hb_123304_010 Hb_123304_010 Hb_009164_020--Hb_123304_010 Hb_038601_010 Hb_038601_010 Hb_009164_020--Hb_038601_010 Hb_154114_020 Hb_154114_020 Hb_009164_020--Hb_154114_020 Hb_059295_010--Hb_000574_520 Hb_000069_400 Hb_000069_400 Hb_059295_010--Hb_000069_400 Hb_059295_010--Hb_001829_030 Hb_008147_110 Hb_008147_110 Hb_059295_010--Hb_008147_110 Hb_001396_060 Hb_001396_060 Hb_059295_010--Hb_001396_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0199003 0.233919 0.0167572 0.0199369 0.0427563
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0143528 0

CAGE analysis