Hb_001138_030

Information

Type -
Description -
Location Contig1138: 52005-54752
Sequence    

Annotation

kegg
ID pop:POPTR_0001s30840g
description POPTRDRAFT_815682; STRESS ENHANCED protein 1
nr
ID XP_002300234.1
description STRESS ENHANCED protein 1 [Populus trichocarpa]
swissprot
ID Q9M7I9
description Stress enhanced protein 1, chloroplastic OS=Arabidopsis thaliana GN=SEP1 PE=2 SV=1
trembl
ID A9PFE3
description STRESS ENHANCED protein 1 OS=Populus trichocarpa GN=POPTR_0001s30840g PE=2 SV=1
Gene Ontology
ID GO:0016168
description stress enhanced protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04127: 51950-54680
cDNA
(Sanger)
(ID:Location)		 005_A03.ab1: 51950-54663 , 022_H22.ab1: 51954-54663 , 031_N13.ab1: 51980-54663 , 032_G20.ab1: 51964-54663 , 036_J01.ab1: 51950-54663 , 044_K12.ab1: 51953-54663 , 048_M19.ab1: 52007-54663

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001138_030 0.0 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
2 Hb_129459_010 0.1563224935 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
3 Hb_045481_010 0.2154335997 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_000189_430 0.2599086375 - - unnamed protein product [Vitis vinifera]
5 Hb_011161_030 0.2656137343 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
6 Hb_002475_120 0.2678849105 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
7 Hb_003494_010 0.2691445887 - - hypothetical protein JCGZ_19838 [Jatropha curcas]
8 Hb_004445_010 0.2806345211 - - kinase family protein [Populus trichocarpa]
9 Hb_154114_030 0.2831378286 - - amino acid binding protein, putative [Ricinus communis]
10 Hb_003740_010 0.2848585108 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007879_010 0.2910421199 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
12 Hb_000260_140 0.2919722431 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
13 Hb_061466_020 0.2921725217 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
14 Hb_006973_060 0.2960162458 - - Uncharacterized protein TCM_038475 [Theobroma cacao]
15 Hb_011609_040 0.3009381157 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 40 [Jatropha curcas]
16 Hb_000003_140 0.303093915 - - hypothetical protein glysoja_047034, partial [Glycine soja]
17 Hb_002960_110 0.3033521115 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
18 Hb_004994_130 0.3034924298 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]
19 Hb_000816_010 0.3035593262 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
20 Hb_160233_020 0.3075774417 - - -

Gene co-expression network

sample Hb_001138_030 Hb_001138_030 Hb_129459_010 Hb_129459_010 Hb_001138_030--Hb_129459_010 Hb_045481_010 Hb_045481_010 Hb_001138_030--Hb_045481_010 Hb_000189_430 Hb_000189_430 Hb_001138_030--Hb_000189_430 Hb_011161_030 Hb_011161_030 Hb_001138_030--Hb_011161_030 Hb_002475_120 Hb_002475_120 Hb_001138_030--Hb_002475_120 Hb_003494_010 Hb_003494_010 Hb_001138_030--Hb_003494_010 Hb_129459_010--Hb_011161_030 Hb_061466_020 Hb_061466_020 Hb_129459_010--Hb_061466_020 Hb_129459_010--Hb_000189_430 Hb_167508_010 Hb_167508_010 Hb_129459_010--Hb_167508_010 Hb_160233_020 Hb_160233_020 Hb_129459_010--Hb_160233_020 Hb_059301_010 Hb_059301_010 Hb_045481_010--Hb_059301_010 Hb_045481_010--Hb_129459_010 Hb_000003_140 Hb_000003_140 Hb_045481_010--Hb_000003_140 Hb_000816_010 Hb_000816_010 Hb_045481_010--Hb_000816_010 Hb_045481_010--Hb_167508_010 Hb_000318_240 Hb_000318_240 Hb_000189_430--Hb_000318_240 Hb_001767_040 Hb_001767_040 Hb_000189_430--Hb_001767_040 Hb_001269_310 Hb_001269_310 Hb_000189_430--Hb_001269_310 Hb_005548_030 Hb_005548_030 Hb_000189_430--Hb_005548_030 Hb_000997_150 Hb_000997_150 Hb_000189_430--Hb_000997_150 Hb_034310_010 Hb_034310_010 Hb_011161_030--Hb_034310_010 Hb_004495_010 Hb_004495_010 Hb_011161_030--Hb_004495_010 Hb_074184_010 Hb_074184_010 Hb_011161_030--Hb_074184_010 Hb_002374_330 Hb_002374_330 Hb_011161_030--Hb_002374_330 Hb_000172_490 Hb_000172_490 Hb_011161_030--Hb_000172_490 Hb_006816_330 Hb_006816_330 Hb_002475_120--Hb_006816_330 Hb_008511_060 Hb_008511_060 Hb_002475_120--Hb_008511_060 Hb_004052_070 Hb_004052_070 Hb_002475_120--Hb_004052_070 Hb_001021_160 Hb_001021_160 Hb_002475_120--Hb_001021_160 Hb_012586_050 Hb_012586_050 Hb_002475_120--Hb_012586_050 Hb_149838_010 Hb_149838_010 Hb_002475_120--Hb_149838_010 Hb_004342_020 Hb_004342_020 Hb_003494_010--Hb_004342_020 Hb_003494_010--Hb_012586_050 Hb_002960_110 Hb_002960_110 Hb_003494_010--Hb_002960_110 Hb_019715_010 Hb_019715_010 Hb_003494_010--Hb_019715_010 Hb_002447_020 Hb_002447_020 Hb_003494_010--Hb_002447_020 Hb_027472_130 Hb_027472_130 Hb_003494_010--Hb_027472_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9123 8.79303 71.143 23.815 48.8127 14.0703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157124 0.0617628 0 0 0.122468

CAGE analysis