Hb_001767_040

Information

Type -
Description -
Location Contig1767: 38766-42179
Sequence    

Annotation

kegg
ID rcu:RCOM_1103250
description dehydroascorbate reductase, putative
nr
ID XP_002523030.1
description dehydroascorbate reductase, putative [Ricinus communis]
swissprot
ID Q9FRL8
description Glutathione S-transferase DHAR2 OS=Arabidopsis thaliana GN=DHAR2 PE=1 SV=1
trembl
ID B9SAL1
description Dehydroascorbate reductase, putative OS=Ricinus communis GN=RCOM_1103250 PE=4 SV=1
Gene Ontology
ID GO:0004364
description glutathione s-transferase dhar2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16952: 38881-42176 , PASA_asmbl_16953: 39088-39877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001767_040 0.0 - - dehydroascorbate reductase, putative [Ricinus communis]
2 Hb_007603_020 0.1900814003 - - PREDICTED: leucine-rich repeat receptor protein kinase MSP1-like [Jatropha curcas]
3 Hb_000997_150 0.2011181569 - - ankyrin repeat-containing protein, putative [Ricinus communis]
4 Hb_000189_430 0.2089878792 - - unnamed protein product [Vitis vinifera]
5 Hb_001269_310 0.2164208666 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
6 Hb_001195_190 0.2202869029 - - conserved hypothetical protein [Ricinus communis]
7 Hb_097646_010 0.2226724711 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
8 Hb_001565_020 0.228194386 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial, partial [Jatropha curcas]
9 Hb_001565_060 0.229868169 - - PREDICTED: probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial [Jatropha curcas]
10 Hb_007423_030 0.2304968457 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
11 Hb_003119_050 0.2308337287 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
12 Hb_002942_090 0.2359001127 - - DNAJ heat shock N-terminal domain-containing protein, putative [Theobroma cacao]
13 Hb_002232_300 0.2389500781 - - Squalene monooxygenase, putative [Ricinus communis]
14 Hb_000165_140 0.2389757841 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
15 Hb_078160_010 0.241988998 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
16 Hb_001571_030 0.2437907653 - - PREDICTED: uncharacterized protein LOC105640040 isoform X1 [Jatropha curcas]
17 Hb_003001_040 0.2440988507 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
18 Hb_017491_070 0.2451235703 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]
19 Hb_067197_030 0.2457389581 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
20 Hb_004994_130 0.247849606 transcription factor TF Family: MYB PREDICTED: myb-like protein M [Jatropha curcas]

Gene co-expression network

sample Hb_001767_040 Hb_001767_040 Hb_007603_020 Hb_007603_020 Hb_001767_040--Hb_007603_020 Hb_000997_150 Hb_000997_150 Hb_001767_040--Hb_000997_150 Hb_000189_430 Hb_000189_430 Hb_001767_040--Hb_000189_430 Hb_001269_310 Hb_001269_310 Hb_001767_040--Hb_001269_310 Hb_001195_190 Hb_001195_190 Hb_001767_040--Hb_001195_190 Hb_097646_010 Hb_097646_010 Hb_001767_040--Hb_097646_010 Hb_002035_090 Hb_002035_090 Hb_007603_020--Hb_002035_090 Hb_000181_410 Hb_000181_410 Hb_007603_020--Hb_000181_410 Hb_100964_010 Hb_100964_010 Hb_007603_020--Hb_100964_010 Hb_001622_010 Hb_001622_010 Hb_007603_020--Hb_001622_010 Hb_000165_140 Hb_000165_140 Hb_007603_020--Hb_000165_140 Hb_000732_070 Hb_000732_070 Hb_000997_150--Hb_000732_070 Hb_001454_220 Hb_001454_220 Hb_000997_150--Hb_001454_220 Hb_000997_150--Hb_001269_310 Hb_002400_230 Hb_002400_230 Hb_000997_150--Hb_002400_230 Hb_044155_010 Hb_044155_010 Hb_000997_150--Hb_044155_010 Hb_000185_150 Hb_000185_150 Hb_000997_150--Hb_000185_150 Hb_000318_240 Hb_000318_240 Hb_000189_430--Hb_000318_240 Hb_129459_010 Hb_129459_010 Hb_000189_430--Hb_129459_010 Hb_000189_430--Hb_001269_310 Hb_005548_030 Hb_005548_030 Hb_000189_430--Hb_005548_030 Hb_000189_430--Hb_000997_150 Hb_004223_110 Hb_004223_110 Hb_001269_310--Hb_004223_110 Hb_001051_090 Hb_001051_090 Hb_001269_310--Hb_001051_090 Hb_001269_310--Hb_002400_230 Hb_000175_630 Hb_000175_630 Hb_001269_310--Hb_000175_630 Hb_003026_030 Hb_003026_030 Hb_001269_310--Hb_003026_030 Hb_010521_020 Hb_010521_020 Hb_001195_190--Hb_010521_020 Hb_004296_010 Hb_004296_010 Hb_001195_190--Hb_004296_010 Hb_000505_110 Hb_000505_110 Hb_001195_190--Hb_000505_110 Hb_001195_190--Hb_001269_310 Hb_000421_130 Hb_000421_130 Hb_001195_190--Hb_000421_130 Hb_100525_010 Hb_100525_010 Hb_097646_010--Hb_100525_010 Hb_024698_010 Hb_024698_010 Hb_097646_010--Hb_024698_010 Hb_003001_040 Hb_003001_040 Hb_097646_010--Hb_003001_040 Hb_000056_010 Hb_000056_010 Hb_097646_010--Hb_000056_010 Hb_003376_260 Hb_003376_260 Hb_097646_010--Hb_003376_260 Hb_027380_230 Hb_027380_230 Hb_097646_010--Hb_027380_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.7827 49.2012 59.4034 32.7581 53.0275 18.0156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0554405 0 21.2416 1.05396 15.9688

CAGE analysis