Hb_000189_430

Information

Type -
Description -
Location Contig189: 365263-365732
Sequence    

Annotation

kegg
ID cam:101494058
description uncharacterized LOC101494058
nr
ID CBI26243.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7T6X2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03360 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase yrzf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18692: 365074-365703
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_430 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000318_240 0.1971916273 - - conserved hypothetical protein [Ricinus communis]
3 Hb_129459_010 0.1982096849 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
4 Hb_001767_040 0.2089878792 - - dehydroascorbate reductase, putative [Ricinus communis]
5 Hb_001269_310 0.2093519578 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
6 Hb_005548_030 0.213408145 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
7 Hb_000997_150 0.21417211 - - ankyrin repeat-containing protein, putative [Ricinus communis]
8 Hb_000505_110 0.2154790821 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
9 Hb_000165_140 0.220826785 - - PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X2 [Populus euphratica]
10 Hb_003119_050 0.2210177696 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
11 Hb_001196_080 0.2213338367 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
12 Hb_003026_030 0.2225658142 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
13 Hb_002291_060 0.2255107785 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
14 Hb_000062_030 0.2281802032 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
15 Hb_000692_120 0.2292956681 - - ATP synthase subunit beta vacuolar, putative [Ricinus communis]
16 Hb_001114_020 0.229368157 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
17 Hb_003228_030 0.2301666433 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
18 Hb_000173_150 0.2307034814 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
19 Hb_002475_120 0.2309845889 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
20 Hb_000599_170 0.2309877731 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_000189_430 Hb_000189_430 Hb_000318_240 Hb_000318_240 Hb_000189_430--Hb_000318_240 Hb_129459_010 Hb_129459_010 Hb_000189_430--Hb_129459_010 Hb_001767_040 Hb_001767_040 Hb_000189_430--Hb_001767_040 Hb_001269_310 Hb_001269_310 Hb_000189_430--Hb_001269_310 Hb_005548_030 Hb_005548_030 Hb_000189_430--Hb_005548_030 Hb_000997_150 Hb_000997_150 Hb_000189_430--Hb_000997_150 Hb_002686_330 Hb_002686_330 Hb_000318_240--Hb_002686_330 Hb_008725_140 Hb_008725_140 Hb_000318_240--Hb_008725_140 Hb_003026_030 Hb_003026_030 Hb_000318_240--Hb_003026_030 Hb_001269_510 Hb_001269_510 Hb_000318_240--Hb_001269_510 Hb_000318_240--Hb_000997_150 Hb_001138_030 Hb_001138_030 Hb_129459_010--Hb_001138_030 Hb_011161_030 Hb_011161_030 Hb_129459_010--Hb_011161_030 Hb_061466_020 Hb_061466_020 Hb_129459_010--Hb_061466_020 Hb_167508_010 Hb_167508_010 Hb_129459_010--Hb_167508_010 Hb_160233_020 Hb_160233_020 Hb_129459_010--Hb_160233_020 Hb_007603_020 Hb_007603_020 Hb_001767_040--Hb_007603_020 Hb_001767_040--Hb_000997_150 Hb_001767_040--Hb_001269_310 Hb_001195_190 Hb_001195_190 Hb_001767_040--Hb_001195_190 Hb_097646_010 Hb_097646_010 Hb_001767_040--Hb_097646_010 Hb_001269_310--Hb_000997_150 Hb_004223_110 Hb_004223_110 Hb_001269_310--Hb_004223_110 Hb_001051_090 Hb_001051_090 Hb_001269_310--Hb_001051_090 Hb_002400_230 Hb_002400_230 Hb_001269_310--Hb_002400_230 Hb_000175_630 Hb_000175_630 Hb_001269_310--Hb_000175_630 Hb_001269_310--Hb_003026_030 Hb_000692_120 Hb_000692_120 Hb_005548_030--Hb_000692_120 Hb_003119_050 Hb_003119_050 Hb_005548_030--Hb_003119_050 Hb_001196_080 Hb_001196_080 Hb_005548_030--Hb_001196_080 Hb_005000_140 Hb_005000_140 Hb_005548_030--Hb_005000_140 Hb_074184_010 Hb_074184_010 Hb_005548_030--Hb_074184_010 Hb_055488_020 Hb_055488_020 Hb_005548_030--Hb_055488_020 Hb_000732_070 Hb_000732_070 Hb_000997_150--Hb_000732_070 Hb_001454_220 Hb_001454_220 Hb_000997_150--Hb_001454_220 Hb_000997_150--Hb_002400_230 Hb_044155_010 Hb_044155_010 Hb_000997_150--Hb_044155_010 Hb_000185_150 Hb_000185_150 Hb_000997_150--Hb_000185_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.72273 14.5033 20.0142 8.98622 20.2218 5.65904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.29579 0.697775 0.346836 1.26283 2.27055

CAGE analysis