Hb_055488_020

Information

Type -
Description -
Location Contig55488: 14128-15327
Sequence    

Annotation

kegg
ID rcu:RCOM_0003550
description hypothetical protein
nr
ID XP_012081168.1
description PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K215
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17013 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055488_020 0.0 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
2 Hb_002701_210 0.1142192942 - - Protein COBRA precursor, putative [Ricinus communis]
3 Hb_003078_030 0.1146066338 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
4 Hb_000012_210 0.1192656639 - - PREDICTED: serine hydroxymethyltransferase 3, chloroplastic [Jatropha curcas]
5 Hb_001009_090 0.1310544588 - - CDK protein [Hevea brasiliensis]
6 Hb_005096_010 0.1322729133 - - PREDICTED: uncharacterized protein LOC105641403 [Jatropha curcas]
7 Hb_000056_300 0.1327285971 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
8 Hb_000186_200 0.1331745792 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
9 Hb_002311_140 0.1333481896 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
10 Hb_006054_030 0.1374776348 - - PREDICTED: protein GPR107-like [Jatropha curcas]
11 Hb_000134_340 0.1487653183 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
12 Hb_000163_230 0.1512955514 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
13 Hb_005000_140 0.151532245 - - PREDICTED: uncharacterized protein LOC105637876 isoform X1 [Jatropha curcas]
14 Hb_006711_070 0.1533585216 - - hypothetical protein RCOM_1336320 [Ricinus communis]
15 Hb_001410_130 0.1539100591 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]
16 Hb_001235_170 0.1557053061 - - PREDICTED: putative glucuronosyltransferase PGSIP8 [Jatropha curcas]
17 Hb_001369_780 0.1567961109 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000941_080 0.1579472016 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
19 Hb_005054_310 0.1582005104 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
20 Hb_005000_300 0.1598950373 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_055488_020 Hb_055488_020 Hb_002701_210 Hb_002701_210 Hb_055488_020--Hb_002701_210 Hb_003078_030 Hb_003078_030 Hb_055488_020--Hb_003078_030 Hb_000012_210 Hb_000012_210 Hb_055488_020--Hb_000012_210 Hb_001009_090 Hb_001009_090 Hb_055488_020--Hb_001009_090 Hb_005096_010 Hb_005096_010 Hb_055488_020--Hb_005096_010 Hb_000056_300 Hb_000056_300 Hb_055488_020--Hb_000056_300 Hb_000186_200 Hb_000186_200 Hb_002701_210--Hb_000186_200 Hb_002701_210--Hb_003078_030 Hb_000084_240 Hb_000084_240 Hb_002701_210--Hb_000084_240 Hb_000163_230 Hb_000163_230 Hb_002701_210--Hb_000163_230 Hb_000045_260 Hb_000045_260 Hb_002701_210--Hb_000045_260 Hb_004108_240 Hb_004108_240 Hb_002701_210--Hb_004108_240 Hb_003078_030--Hb_000056_300 Hb_003078_030--Hb_000186_200 Hb_003078_030--Hb_000163_230 Hb_003078_030--Hb_001009_090 Hb_005000_300 Hb_005000_300 Hb_003078_030--Hb_005000_300 Hb_000836_370 Hb_000836_370 Hb_003078_030--Hb_000836_370 Hb_005000_140 Hb_005000_140 Hb_000012_210--Hb_005000_140 Hb_156635_020 Hb_156635_020 Hb_000012_210--Hb_156635_020 Hb_073171_090 Hb_073171_090 Hb_000012_210--Hb_073171_090 Hb_002311_140 Hb_002311_140 Hb_000012_210--Hb_002311_140 Hb_001259_110 Hb_001259_110 Hb_000012_210--Hb_001259_110 Hb_001410_130 Hb_001410_130 Hb_001009_090--Hb_001410_130 Hb_004526_010 Hb_004526_010 Hb_001009_090--Hb_004526_010 Hb_001009_090--Hb_000163_230 Hb_000941_080 Hb_000941_080 Hb_001009_090--Hb_000941_080 Hb_005649_090 Hb_005649_090 Hb_001009_090--Hb_005649_090 Hb_001009_090--Hb_000186_200 Hb_005725_060 Hb_005725_060 Hb_005096_010--Hb_005725_060 Hb_006711_070 Hb_006711_070 Hb_005096_010--Hb_006711_070 Hb_006054_030 Hb_006054_030 Hb_005096_010--Hb_006054_030 Hb_004218_090 Hb_004218_090 Hb_005096_010--Hb_004218_090 Hb_000732_080 Hb_000732_080 Hb_005096_010--Hb_000732_080 Hb_128695_030 Hb_128695_030 Hb_000056_300--Hb_128695_030 Hb_005054_310 Hb_005054_310 Hb_000056_300--Hb_005054_310 Hb_000056_300--Hb_000836_370 Hb_000056_300--Hb_005649_090 Hb_000056_300--Hb_005000_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8756 52.3598 25.9416 27.3198 18.7271 5.33289
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.43865 4.5317 7.71777 10.2529 4.16092

CAGE analysis