Hb_005096_010

Information

Type -
Description -
Location Contig5096: 42181-52064
Sequence    

Annotation

kegg
ID rcu:RCOM_0814310
description electron transporter, putative
nr
ID XP_012081320.1
description PREDICTED: uncharacterized protein LOC105641403 [Jatropha curcas]
swissprot
ID P0AC62
description Glutaredoxin-3 OS=Escherichia coli (strain K12) GN=grxC PE=1 SV=2
trembl
ID A0A067K1J4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18579 PE=4 SV=1
Gene Ontology
ID GO:0005622
description PREDICTED: uncharacterized protein LOC105641403

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46226: 42916-48602 , PASA_asmbl_46227: 48872-51810
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005096_010 0.0 - - PREDICTED: uncharacterized protein LOC105641403 [Jatropha curcas]
2 Hb_005725_060 0.1183681306 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
3 Hb_006711_070 0.1252637949 - - hypothetical protein RCOM_1336320 [Ricinus communis]
4 Hb_006054_030 0.1297530856 - - PREDICTED: protein GPR107-like [Jatropha curcas]
5 Hb_055488_020 0.1322729133 - - PREDICTED: uncharacterized protein LOC105641270 [Jatropha curcas]
6 Hb_004218_090 0.1327820199 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
7 Hb_000732_080 0.1345588532 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]
8 Hb_127599_010 0.1350634368 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
9 Hb_021443_090 0.1388188478 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
10 Hb_006738_050 0.1413643389 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
11 Hb_000371_060 0.1425919709 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
12 Hb_012799_140 0.1430849988 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
13 Hb_000134_340 0.1455255315 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
14 Hb_000205_240 0.1461720348 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_002119_090 0.1464404346 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
16 Hb_000700_060 0.1465629585 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
17 Hb_003078_030 0.1474897351 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
18 Hb_000941_080 0.1500218132 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
19 Hb_000363_370 0.150959093 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
20 Hb_004785_030 0.1514135825 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]

Gene co-expression network

sample Hb_005096_010 Hb_005096_010 Hb_005725_060 Hb_005725_060 Hb_005096_010--Hb_005725_060 Hb_006711_070 Hb_006711_070 Hb_005096_010--Hb_006711_070 Hb_006054_030 Hb_006054_030 Hb_005096_010--Hb_006054_030 Hb_055488_020 Hb_055488_020 Hb_005096_010--Hb_055488_020 Hb_004218_090 Hb_004218_090 Hb_005096_010--Hb_004218_090 Hb_000732_080 Hb_000732_080 Hb_005096_010--Hb_000732_080 Hb_155396_010 Hb_155396_010 Hb_005725_060--Hb_155396_010 Hb_006198_020 Hb_006198_020 Hb_005725_060--Hb_006198_020 Hb_000134_340 Hb_000134_340 Hb_005725_060--Hb_000134_340 Hb_007894_130 Hb_007894_130 Hb_005725_060--Hb_007894_130 Hb_005725_060--Hb_004218_090 Hb_000117_060 Hb_000117_060 Hb_006711_070--Hb_000117_060 Hb_003078_030 Hb_003078_030 Hb_006711_070--Hb_003078_030 Hb_006711_070--Hb_000134_340 Hb_138585_100 Hb_138585_100 Hb_006711_070--Hb_138585_100 Hb_021443_090 Hb_021443_090 Hb_006711_070--Hb_021443_090 Hb_000941_080 Hb_000941_080 Hb_006054_030--Hb_000941_080 Hb_001369_780 Hb_001369_780 Hb_006054_030--Hb_001369_780 Hb_000069_780 Hb_000069_780 Hb_006054_030--Hb_000069_780 Hb_001410_130 Hb_001410_130 Hb_006054_030--Hb_001410_130 Hb_000270_230 Hb_000270_230 Hb_006054_030--Hb_000270_230 Hb_000460_060 Hb_000460_060 Hb_006054_030--Hb_000460_060 Hb_002701_210 Hb_002701_210 Hb_055488_020--Hb_002701_210 Hb_055488_020--Hb_003078_030 Hb_000012_210 Hb_000012_210 Hb_055488_020--Hb_000012_210 Hb_001009_090 Hb_001009_090 Hb_055488_020--Hb_001009_090 Hb_000056_300 Hb_000056_300 Hb_055488_020--Hb_000056_300 Hb_018301_010 Hb_018301_010 Hb_004218_090--Hb_018301_010 Hb_127599_010 Hb_127599_010 Hb_004218_090--Hb_127599_010 Hb_006683_040 Hb_006683_040 Hb_004218_090--Hb_006683_040 Hb_000465_080 Hb_000465_080 Hb_004218_090--Hb_000465_080 Hb_000061_490 Hb_000061_490 Hb_004218_090--Hb_000061_490 Hb_000120_420 Hb_000120_420 Hb_004218_090--Hb_000120_420 Hb_103788_010 Hb_103788_010 Hb_000732_080--Hb_103788_010 Hb_089100_040 Hb_089100_040 Hb_000732_080--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000732_080--Hb_004162_120 Hb_000732_080--Hb_006054_030 Hb_080451_010 Hb_080451_010 Hb_000732_080--Hb_080451_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.83562 10.814 2.82625 4.88971 2.89944 1.20758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.22213 1.03193 1.74763 3.02847 1.3396

CAGE analysis