Hb_005725_060

Information

Type -
Description -
Location Contig5725: 17357-18715
Sequence    

Annotation

kegg
ID rcu:RCOM_1586730
description E3 ubiquitin ligase PUB14, putative
nr
ID XP_012068185.1
description PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
swissprot
ID Q9FHN9
description U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1
trembl
ID A0A067LBW5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16001 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 30-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 034_C09.ab1: 16883-17622

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005725_060 0.0 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
2 Hb_155396_010 0.0975702161 - - TMV resistance protein N, putative [Ricinus communis]
3 Hb_005096_010 0.1183681306 - - PREDICTED: uncharacterized protein LOC105641403 [Jatropha curcas]
4 Hb_006198_020 0.1263126772 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
5 Hb_000134_340 0.1281781839 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 5 [Jatropha curcas]
6 Hb_007894_130 0.131621694 - - hypothetical protein RCOM_0584960 [Ricinus communis]
7 Hb_004218_090 0.1379314256 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
8 Hb_000363_370 0.1382647279 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
9 Hb_001055_030 0.1411273552 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
10 Hb_002666_080 0.1420222144 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001489_100 0.142845422 - - PREDICTED: hypersensitive-induced response protein 2 [Jatropha curcas]
12 Hb_003175_030 0.1430307618 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
13 Hb_021443_090 0.1450238771 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
14 Hb_005015_080 0.1450901541 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
15 Hb_006738_050 0.1452071131 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
16 Hb_003078_020 0.1461505231 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
17 Hb_002046_020 0.1467574864 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
18 Hb_005389_160 0.1477867314 - - PREDICTED: casein kinase I [Jatropha curcas]
19 Hb_000780_170 0.1489693063 - - PREDICTED: OBERON-like protein [Jatropha curcas]
20 Hb_006711_070 0.1489842926 - - hypothetical protein RCOM_1336320 [Ricinus communis]

Gene co-expression network

sample Hb_005725_060 Hb_005725_060 Hb_155396_010 Hb_155396_010 Hb_005725_060--Hb_155396_010 Hb_005096_010 Hb_005096_010 Hb_005725_060--Hb_005096_010 Hb_006198_020 Hb_006198_020 Hb_005725_060--Hb_006198_020 Hb_000134_340 Hb_000134_340 Hb_005725_060--Hb_000134_340 Hb_007894_130 Hb_007894_130 Hb_005725_060--Hb_007894_130 Hb_004218_090 Hb_004218_090 Hb_005725_060--Hb_004218_090 Hb_003373_040 Hb_003373_040 Hb_155396_010--Hb_003373_040 Hb_004109_030 Hb_004109_030 Hb_155396_010--Hb_004109_030 Hb_116086_010 Hb_116086_010 Hb_155396_010--Hb_116086_010 Hb_001864_060 Hb_001864_060 Hb_155396_010--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_155396_010--Hb_003175_030 Hb_006711_070 Hb_006711_070 Hb_005096_010--Hb_006711_070 Hb_006054_030 Hb_006054_030 Hb_005096_010--Hb_006054_030 Hb_055488_020 Hb_055488_020 Hb_005096_010--Hb_055488_020 Hb_005096_010--Hb_004218_090 Hb_000732_080 Hb_000732_080 Hb_005096_010--Hb_000732_080 Hb_000197_030 Hb_000197_030 Hb_006198_020--Hb_000197_030 Hb_005015_080 Hb_005015_080 Hb_006198_020--Hb_005015_080 Hb_000418_010 Hb_000418_010 Hb_006198_020--Hb_000418_010 Hb_000059_020 Hb_000059_020 Hb_006198_020--Hb_000059_020 Hb_000069_130 Hb_000069_130 Hb_006198_020--Hb_000069_130 Hb_000940_200 Hb_000940_200 Hb_006198_020--Hb_000940_200 Hb_002119_090 Hb_002119_090 Hb_000134_340--Hb_002119_090 Hb_003078_030 Hb_003078_030 Hb_000134_340--Hb_003078_030 Hb_000608_280 Hb_000608_280 Hb_000134_340--Hb_000608_280 Hb_006738_050 Hb_006738_050 Hb_000134_340--Hb_006738_050 Hb_001009_090 Hb_001009_090 Hb_000134_340--Hb_001009_090 Hb_000363_370 Hb_000363_370 Hb_000134_340--Hb_000363_370 Hb_001055_030 Hb_001055_030 Hb_007894_130--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_007894_130--Hb_000061_490 Hb_000780_170 Hb_000780_170 Hb_007894_130--Hb_000780_170 Hb_005260_010 Hb_005260_010 Hb_007894_130--Hb_005260_010 Hb_000768_180 Hb_000768_180 Hb_007894_130--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_007894_130--Hb_000236_220 Hb_018301_010 Hb_018301_010 Hb_004218_090--Hb_018301_010 Hb_127599_010 Hb_127599_010 Hb_004218_090--Hb_127599_010 Hb_006683_040 Hb_006683_040 Hb_004218_090--Hb_006683_040 Hb_000465_080 Hb_000465_080 Hb_004218_090--Hb_000465_080 Hb_004218_090--Hb_000061_490 Hb_000120_420 Hb_000120_420 Hb_004218_090--Hb_000120_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5732 42.4993 15.6521 23.6696 13.2774 13.1012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1981 4.57306 12.7328 13.4239 3.27066

CAGE analysis