Hb_167508_010

Information

Type -
Description -
Location Contig167508: 2318-3075
Sequence    

Annotation

kegg
ID pop:POPTR_0001s27330g
description POPTRDRAFT_840272; hypothetical protein
nr
ID XP_002298433.1
description hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GFE2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s27330g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15540: 2317-2800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167508_010 0.0 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
2 Hb_061466_020 0.1791999604 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
3 Hb_000003_140 0.1904621876 - - hypothetical protein glysoja_047034, partial [Glycine soja]
4 Hb_001214_170 0.2138616864 - - pyruvate kinase family protein [Medicago truncatula]
5 Hb_129459_010 0.2152526594 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
6 Hb_099990_030 0.2237005055 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
7 Hb_000189_430 0.2330568164 - - unnamed protein product [Vitis vinifera]
8 Hb_161023_010 0.2380732157 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
9 Hb_160233_020 0.2484767332 - - -
10 Hb_004524_070 0.2505440044 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
11 Hb_005517_010 0.2536351435 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
12 Hb_001944_030 0.2565065879 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
13 Hb_045481_010 0.2592061997 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_014919_020 0.2640358929 - - -
15 Hb_002843_090 0.2649111635 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
16 Hb_012107_070 0.2662129522 - - -
17 Hb_005548_030 0.2681833116 - - hypothetical protein JCGZ_05606 [Jatropha curcas]
18 Hb_163508_010 0.2762013489 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
19 Hb_074184_010 0.2773593249 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
20 Hb_015928_020 0.2782796182 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]

Gene co-expression network

sample Hb_167508_010 Hb_167508_010 Hb_061466_020 Hb_061466_020 Hb_167508_010--Hb_061466_020 Hb_000003_140 Hb_000003_140 Hb_167508_010--Hb_000003_140 Hb_001214_170 Hb_001214_170 Hb_167508_010--Hb_001214_170 Hb_129459_010 Hb_129459_010 Hb_167508_010--Hb_129459_010 Hb_099990_030 Hb_099990_030 Hb_167508_010--Hb_099990_030 Hb_000189_430 Hb_000189_430 Hb_167508_010--Hb_000189_430 Hb_015928_020 Hb_015928_020 Hb_061466_020--Hb_015928_020 Hb_000997_010 Hb_000997_010 Hb_061466_020--Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_061466_020--Hb_014361_050 Hb_061466_020--Hb_129459_010 Hb_005517_010 Hb_005517_010 Hb_061466_020--Hb_005517_010 Hb_003605_150 Hb_003605_150 Hb_000003_140--Hb_003605_150 Hb_045481_010 Hb_045481_010 Hb_000003_140--Hb_045481_010 Hb_000003_140--Hb_129459_010 Hb_001269_510 Hb_001269_510 Hb_000003_140--Hb_001269_510 Hb_013016_010 Hb_013016_010 Hb_000003_140--Hb_013016_010 Hb_161023_010 Hb_161023_010 Hb_001214_170--Hb_161023_010 Hb_160233_020 Hb_160233_020 Hb_001214_170--Hb_160233_020 Hb_001944_030 Hb_001944_030 Hb_001214_170--Hb_001944_030 Hb_007926_010 Hb_007926_010 Hb_001214_170--Hb_007926_010 Hb_113823_010 Hb_113823_010 Hb_001214_170--Hb_113823_010 Hb_001138_030 Hb_001138_030 Hb_129459_010--Hb_001138_030 Hb_011161_030 Hb_011161_030 Hb_129459_010--Hb_011161_030 Hb_129459_010--Hb_000189_430 Hb_129459_010--Hb_160233_020 Hb_000787_010 Hb_000787_010 Hb_099990_030--Hb_000787_010 Hb_004968_010 Hb_004968_010 Hb_099990_030--Hb_004968_010 Hb_004524_070 Hb_004524_070 Hb_099990_030--Hb_004524_070 Hb_099990_030--Hb_061466_020 Hb_099990_030--Hb_161023_010 Hb_000318_240 Hb_000318_240 Hb_000189_430--Hb_000318_240 Hb_001767_040 Hb_001767_040 Hb_000189_430--Hb_001767_040 Hb_001269_310 Hb_001269_310 Hb_000189_430--Hb_001269_310 Hb_005548_030 Hb_005548_030 Hb_000189_430--Hb_005548_030 Hb_000997_150 Hb_000997_150 Hb_000189_430--Hb_000997_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.98673 3.79357 6.60161 1.14517 3.44457 0.49054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0833308 0.37815

CAGE analysis