Hb_003605_150

Information

Type -
Description -
Location Contig3605: 101366-102358
Sequence    

Annotation

kegg
ID pop:POPTR_0002s16720g
description POPTRDRAFT_799078; chitinase family protein
nr
ID XP_002301383.1
description chitinase family protein [Populus trichocarpa]
swissprot
ID P51614
description Acidic endochitinase OS=Vitis vinifera GN=CHIT3 PE=2 SV=1
trembl
ID B9GQE7
description Chitinase family protein OS=Populus trichocarpa GN=POPTR_0002s16720g PE=3 SV=1
Gene Ontology
ID GO:0004553
description hevamine-a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003605_150 0.0 - - chitinase family protein [Populus trichocarpa]
2 Hb_000185_230 0.2059831547 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_002960_110 0.2276127203 - - PREDICTED: synaptotagmin-2 isoform X1 [Jatropha curcas]
4 Hb_000003_140 0.2294333006 - - hypothetical protein glysoja_047034, partial [Glycine soja]
5 Hb_003529_180 0.2405057741 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
6 Hb_003119_050 0.2426036382 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
7 Hb_002304_010 0.2449382706 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_013016_010 0.2458524261 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000076_100 0.2488783129 - - PREDICTED: septum-promoting GTP-binding protein 1 [Jatropha curcas]
10 Hb_074792_010 0.2524566748 - - PREDICTED: probable lactoylglutathione lyase, chloroplast [Gossypium raimondii]
11 Hb_124951_010 0.2536200347 - - chitinase-like protein [Hevea brasiliensis]
12 Hb_067197_030 0.2584952658 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
13 Hb_000424_070 0.2586858295 - - PREDICTED: serine/arginine repetitive matrix protein 2-like [Jatropha curcas]
14 Hb_000317_190 0.2594739997 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
15 Hb_021443_030 0.2600432401 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
16 Hb_163508_010 0.2611788355 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
17 Hb_001214_190 0.2642602033 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
18 Hb_001269_510 0.2658617363 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
19 Hb_000189_390 0.2660424654 - - PREDICTED: pollen-specific protein SF21-like isoform X1 [Jatropha curcas]
20 Hb_005883_070 0.2678087788 - - PREDICTED: probable myosin-binding protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_003605_150 Hb_003605_150 Hb_000185_230 Hb_000185_230 Hb_003605_150--Hb_000185_230 Hb_002960_110 Hb_002960_110 Hb_003605_150--Hb_002960_110 Hb_000003_140 Hb_000003_140 Hb_003605_150--Hb_000003_140 Hb_003529_180 Hb_003529_180 Hb_003605_150--Hb_003529_180 Hb_003119_050 Hb_003119_050 Hb_003605_150--Hb_003119_050 Hb_002304_010 Hb_002304_010 Hb_003605_150--Hb_002304_010 Hb_001214_190 Hb_001214_190 Hb_000185_230--Hb_001214_190 Hb_005883_070 Hb_005883_070 Hb_000185_230--Hb_005883_070 Hb_000076_100 Hb_000076_100 Hb_000185_230--Hb_000076_100 Hb_124951_010 Hb_124951_010 Hb_000185_230--Hb_124951_010 Hb_001059_090 Hb_001059_090 Hb_000185_230--Hb_001059_090 Hb_176472_020 Hb_176472_020 Hb_000185_230--Hb_176472_020 Hb_000424_070 Hb_000424_070 Hb_002960_110--Hb_000424_070 Hb_074792_010 Hb_074792_010 Hb_002960_110--Hb_074792_010 Hb_000189_390 Hb_000189_390 Hb_002960_110--Hb_000189_390 Hb_002960_110--Hb_003529_180 Hb_000300_710 Hb_000300_710 Hb_002960_110--Hb_000300_710 Hb_000638_260 Hb_000638_260 Hb_002960_110--Hb_000638_260 Hb_167508_010 Hb_167508_010 Hb_000003_140--Hb_167508_010 Hb_045481_010 Hb_045481_010 Hb_000003_140--Hb_045481_010 Hb_129459_010 Hb_129459_010 Hb_000003_140--Hb_129459_010 Hb_001269_510 Hb_001269_510 Hb_000003_140--Hb_001269_510 Hb_013016_010 Hb_013016_010 Hb_000003_140--Hb_013016_010 Hb_002600_130 Hb_002600_130 Hb_003529_180--Hb_002600_130 Hb_000732_030 Hb_000732_030 Hb_003529_180--Hb_000732_030 Hb_011609_010 Hb_011609_010 Hb_003529_180--Hb_011609_010 Hb_004725_030 Hb_004725_030 Hb_003529_180--Hb_004725_030 Hb_000009_220 Hb_000009_220 Hb_003529_180--Hb_000009_220 Hb_003529_180--Hb_000189_390 Hb_027402_040 Hb_027402_040 Hb_003119_050--Hb_027402_040 Hb_000890_010 Hb_000890_010 Hb_003119_050--Hb_000890_010 Hb_003228_030 Hb_003228_030 Hb_003119_050--Hb_003228_030 Hb_013405_150 Hb_013405_150 Hb_003119_050--Hb_013405_150 Hb_091226_010 Hb_091226_010 Hb_003119_050--Hb_091226_010 Hb_000152_760 Hb_000152_760 Hb_003119_050--Hb_000152_760 Hb_003549_130 Hb_003549_130 Hb_002304_010--Hb_003549_130 Hb_000032_200 Hb_000032_200 Hb_002304_010--Hb_000032_200 Hb_008173_060 Hb_008173_060 Hb_002304_010--Hb_008173_060 Hb_012787_030 Hb_012787_030 Hb_002304_010--Hb_012787_030 Hb_003058_030 Hb_003058_030 Hb_002304_010--Hb_003058_030 Hb_002304_010--Hb_176472_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1395 0.488491 1.34236 0.112368 0.319673 0.0640374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0804138 0.147944 0 0.0822118

CAGE analysis