Hb_003058_030

Information

Type -
Description -
Location Contig3058: 10928-13369
Sequence    

Annotation

kegg
ID rcu:RCOM_1479000
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002526062.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q9FMP5
description Calcium-dependent protein kinase 17 OS=Arabidopsis thaliana GN=CPK17 PE=2 SV=1
trembl
ID B9SJ93
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_1479000 PE=4 SV=1
Gene Ontology
ID GO:0005634
description calcium-dependent protein kinase 17

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32297: 10944-11857
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003058_030 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_000134_260 0.1493093442 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
3 Hb_008878_010 0.1594036668 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Populus euphratica]
4 Hb_002374_200 0.1659270505 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
5 Hb_001007_090 0.1700255815 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
6 Hb_001040_060 0.1712593731 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
7 Hb_001396_040 0.1786346364 - - PREDICTED: uncharacterized protein LOC105644845 [Jatropha curcas]
8 Hb_002304_010 0.1787131607 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_000322_160 0.1793747807 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-2-like [Jatropha curcas]
10 Hb_002217_190 0.1803711621 - - invertase [Hevea brasiliensis]
11 Hb_001951_210 0.1806688791 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004551_010 0.1825226728 - - tryptophan synthase beta chain, putative [Ricinus communis]
13 Hb_000046_520 0.1825333168 - - PREDICTED: proline-rich receptor-like protein kinase PERK3 isoform X1 [Jatropha curcas]
14 Hb_003688_220 0.1872631943 - - unknown [Populus trichocarpa]
15 Hb_004970_070 0.1873280716 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
16 Hb_000020_080 0.19086756 transcription factor TF Family: MYB hypothetical protein JCGZ_09080 [Jatropha curcas]
17 Hb_000140_250 0.1917936292 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
18 Hb_008173_130 0.192234765 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
19 Hb_008173_060 0.1929353147 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
20 Hb_004712_090 0.1946787358 - - Serine acetyltransferase 3, mitochondrial precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003058_030 Hb_003058_030 Hb_000134_260 Hb_000134_260 Hb_003058_030--Hb_000134_260 Hb_008878_010 Hb_008878_010 Hb_003058_030--Hb_008878_010 Hb_002374_200 Hb_002374_200 Hb_003058_030--Hb_002374_200 Hb_001007_090 Hb_001007_090 Hb_003058_030--Hb_001007_090 Hb_001040_060 Hb_001040_060 Hb_003058_030--Hb_001040_060 Hb_001396_040 Hb_001396_040 Hb_003058_030--Hb_001396_040 Hb_004712_090 Hb_004712_090 Hb_000134_260--Hb_004712_090 Hb_004551_010 Hb_004551_010 Hb_000134_260--Hb_004551_010 Hb_003688_220 Hb_003688_220 Hb_000134_260--Hb_003688_220 Hb_000134_260--Hb_002374_200 Hb_011918_030 Hb_011918_030 Hb_000134_260--Hb_011918_030 Hb_000035_140 Hb_000035_140 Hb_000134_260--Hb_000035_140 Hb_008878_010--Hb_001007_090 Hb_031266_020 Hb_031266_020 Hb_008878_010--Hb_031266_020 Hb_007101_250 Hb_007101_250 Hb_008878_010--Hb_007101_250 Hb_003599_060 Hb_003599_060 Hb_008878_010--Hb_003599_060 Hb_008878_010--Hb_004551_010 Hb_000215_150 Hb_000215_150 Hb_008878_010--Hb_000215_150 Hb_002400_020 Hb_002400_020 Hb_002374_200--Hb_002400_020 Hb_002374_200--Hb_004551_010 Hb_000454_080 Hb_000454_080 Hb_002374_200--Hb_000454_080 Hb_001660_080 Hb_001660_080 Hb_002374_200--Hb_001660_080 Hb_000322_160 Hb_000322_160 Hb_002374_200--Hb_000322_160 Hb_000521_190 Hb_000521_190 Hb_001007_090--Hb_000521_190 Hb_001007_090--Hb_000134_260 Hb_176472_020 Hb_176472_020 Hb_001007_090--Hb_176472_020 Hb_000866_430 Hb_000866_430 Hb_001007_090--Hb_000866_430 Hb_116420_050 Hb_116420_050 Hb_001007_090--Hb_116420_050 Hb_014361_170 Hb_014361_170 Hb_001040_060--Hb_014361_170 Hb_001627_010 Hb_001627_010 Hb_001040_060--Hb_001627_010 Hb_004970_070 Hb_004970_070 Hb_001040_060--Hb_004970_070 Hb_004679_040 Hb_004679_040 Hb_001040_060--Hb_004679_040 Hb_002217_190 Hb_002217_190 Hb_001040_060--Hb_002217_190 Hb_000567_330 Hb_000567_330 Hb_001040_060--Hb_000567_330 Hb_004846_230 Hb_004846_230 Hb_001396_040--Hb_004846_230 Hb_000388_040 Hb_000388_040 Hb_001396_040--Hb_000388_040 Hb_006788_090 Hb_006788_090 Hb_001396_040--Hb_006788_090 Hb_001396_040--Hb_000134_260 Hb_001001_010 Hb_001001_010 Hb_001396_040--Hb_001001_010 Hb_000349_170 Hb_000349_170 Hb_001396_040--Hb_000349_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0131097 0.27583 0.700254 0.1381 0 0.0130491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0469752 0.0441933 0.046852 0.0984322

CAGE analysis