Hb_002304_010

Information

Type -
Description -
Location Contig2304: 1687-3108
Sequence    

Annotation

kegg
ID rcu:RCOM_0820180
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002525208.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q9LHJ9
description Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1
trembl
ID B9SGT9
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0820180 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 38

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002304_010 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_003549_130 0.157974956 - - neutral/alkaline invertase [Manihot esculenta]
3 Hb_000032_200 0.1696356126 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
4 Hb_008173_060 0.1752505918 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
5 Hb_012787_030 0.175990057 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
6 Hb_003058_030 0.1787131607 - - calcium-dependent protein kinase, putative [Ricinus communis]
7 Hb_176472_020 0.1793630799 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000347_140 0.1813545514 - - PREDICTED: protein FLUORESCENT IN BLUE LIGHT, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_007545_110 0.1814239186 - - catalytic, putative [Ricinus communis]
10 Hb_000134_030 0.182109392 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
11 Hb_000732_030 0.1868775037 - - conserved hypothetical protein [Ricinus communis]
12 Hb_015026_020 0.1897390702 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os07g0563300 [Jatropha curcas]
13 Hb_124951_010 0.1921096769 - - chitinase-like protein [Hevea brasiliensis]
14 Hb_001214_190 0.1955408016 - - hypothetical protein JCGZ_25001 [Jatropha curcas]
15 Hb_006775_070 0.1956846318 - - zinc finger protein, putative [Ricinus communis]
16 Hb_003430_040 0.1965231319 - - spermidine synthase 1, putative [Ricinus communis]
17 Hb_003106_200 0.1965848564 - - PREDICTED: uncharacterized protein LOC105640430 isoform X1 [Jatropha curcas]
18 Hb_003938_170 0.197322202 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like [Jatropha curcas]
19 Hb_002217_190 0.1980360926 - - invertase [Hevea brasiliensis]
20 Hb_000317_190 0.1981193013 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002304_010 Hb_002304_010 Hb_003549_130 Hb_003549_130 Hb_002304_010--Hb_003549_130 Hb_000032_200 Hb_000032_200 Hb_002304_010--Hb_000032_200 Hb_008173_060 Hb_008173_060 Hb_002304_010--Hb_008173_060 Hb_012787_030 Hb_012787_030 Hb_002304_010--Hb_012787_030 Hb_003058_030 Hb_003058_030 Hb_002304_010--Hb_003058_030 Hb_176472_020 Hb_176472_020 Hb_002304_010--Hb_176472_020 Hb_003106_200 Hb_003106_200 Hb_003549_130--Hb_003106_200 Hb_001198_080 Hb_001198_080 Hb_003549_130--Hb_001198_080 Hb_015026_020 Hb_015026_020 Hb_003549_130--Hb_015026_020 Hb_003430_040 Hb_003430_040 Hb_003549_130--Hb_003430_040 Hb_003549_130--Hb_000032_200 Hb_000818_120 Hb_000818_120 Hb_003549_130--Hb_000818_120 Hb_001141_050 Hb_001141_050 Hb_000032_200--Hb_001141_050 Hb_000032_200--Hb_003106_200 Hb_000032_200--Hb_003430_040 Hb_000347_140 Hb_000347_140 Hb_000032_200--Hb_000347_140 Hb_000032_200--Hb_012787_030 Hb_000732_030 Hb_000732_030 Hb_000032_200--Hb_000732_030 Hb_002217_190 Hb_002217_190 Hb_008173_060--Hb_002217_190 Hb_000134_030 Hb_000134_030 Hb_008173_060--Hb_000134_030 Hb_004452_090 Hb_004452_090 Hb_008173_060--Hb_004452_090 Hb_008173_060--Hb_176472_020 Hb_007545_110 Hb_007545_110 Hb_008173_060--Hb_007545_110 Hb_012545_030 Hb_012545_030 Hb_008173_060--Hb_012545_030 Hb_012787_030--Hb_015026_020 Hb_001894_160 Hb_001894_160 Hb_012787_030--Hb_001894_160 Hb_000928_250 Hb_000928_250 Hb_012787_030--Hb_000928_250 Hb_012787_030--Hb_003106_200 Hb_003747_050 Hb_003747_050 Hb_012787_030--Hb_003747_050 Hb_011671_110 Hb_011671_110 Hb_012787_030--Hb_011671_110 Hb_000134_260 Hb_000134_260 Hb_003058_030--Hb_000134_260 Hb_008878_010 Hb_008878_010 Hb_003058_030--Hb_008878_010 Hb_002374_200 Hb_002374_200 Hb_003058_030--Hb_002374_200 Hb_001007_090 Hb_001007_090 Hb_003058_030--Hb_001007_090 Hb_001040_060 Hb_001040_060 Hb_003058_030--Hb_001040_060 Hb_001396_040 Hb_001396_040 Hb_003058_030--Hb_001396_040 Hb_002218_100 Hb_002218_100 Hb_176472_020--Hb_002218_100 Hb_176472_020--Hb_002217_190 Hb_176472_020--Hb_007545_110 Hb_004449_140 Hb_004449_140 Hb_176472_020--Hb_004449_140 Hb_006775_070 Hb_006775_070 Hb_176472_020--Hb_006775_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0793696 0.203778 0.724663 0.164707 0.0244903 0.0430457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0440201 0.0805793 0.0354773 0.0895149

CAGE analysis