Hb_161023_010

Information

Type -
Description -
Location Contig161023: 2-742
Sequence    

Annotation

kegg
ID rcu:RCOM_0187400
description hypothetical protein
nr
ID XP_012079521.1
description PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12619 PE=4 SV=1
Gene Ontology
ID GO:0003677
description homeodomain-like superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_161023_010 0.0 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
2 Hb_188411_010 0.1181573363 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
3 Hb_160233_020 0.1227213236 - - -
4 Hb_001214_170 0.1650549852 - - pyruvate kinase family protein [Medicago truncatula]
5 Hb_014919_020 0.1919267388 - - -
6 Hb_061466_020 0.2285140941 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_167508_010 0.2380732157 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
8 Hb_003740_010 0.2575970766 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000347_090 0.2590237775 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
10 Hb_099990_030 0.2618470123 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
11 Hb_129459_010 0.2631347704 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
12 Hb_011903_010 0.2633252129 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_133605_010 0.2650549259 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
14 Hb_000406_010 0.2670819678 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
15 Hb_001944_030 0.275468949 - - hypothetical protein POPTR_0007s06520g [Populus trichocarpa]
16 Hb_003096_020 0.2793096727 - - -
17 Hb_005568_100 0.2851575121 - - vacuolar proton ATPase a3-like protein [Medicago truncatula]
18 Hb_059301_010 0.2854538996 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
19 Hb_032990_020 0.2870598217 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009189_040 0.2905488296 - - PREDICTED: uncharacterized protein LOC104446949 [Eucalyptus grandis]

Gene co-expression network

sample Hb_161023_010 Hb_161023_010 Hb_188411_010 Hb_188411_010 Hb_161023_010--Hb_188411_010 Hb_160233_020 Hb_160233_020 Hb_161023_010--Hb_160233_020 Hb_001214_170 Hb_001214_170 Hb_161023_010--Hb_001214_170 Hb_014919_020 Hb_014919_020 Hb_161023_010--Hb_014919_020 Hb_061466_020 Hb_061466_020 Hb_161023_010--Hb_061466_020 Hb_167508_010 Hb_167508_010 Hb_161023_010--Hb_167508_010 Hb_000406_010 Hb_000406_010 Hb_188411_010--Hb_000406_010 Hb_188411_010--Hb_160233_020 Hb_133605_010 Hb_133605_010 Hb_188411_010--Hb_133605_010 Hb_188411_010--Hb_014919_020 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010 Hb_160233_020--Hb_001214_170 Hb_003740_010 Hb_003740_010 Hb_160233_020--Hb_003740_010 Hb_160233_020--Hb_014919_020 Hb_129459_010 Hb_129459_010 Hb_160233_020--Hb_129459_010 Hb_001944_030 Hb_001944_030 Hb_001214_170--Hb_001944_030 Hb_001214_170--Hb_167508_010 Hb_007926_010 Hb_007926_010 Hb_001214_170--Hb_007926_010 Hb_113823_010 Hb_113823_010 Hb_001214_170--Hb_113823_010 Hb_000816_010 Hb_000816_010 Hb_014919_020--Hb_000816_010 Hb_000413_150 Hb_000413_150 Hb_014919_020--Hb_000413_150 Hb_059301_010 Hb_059301_010 Hb_014919_020--Hb_059301_010 Hb_005568_100 Hb_005568_100 Hb_014919_020--Hb_005568_100 Hb_015928_020 Hb_015928_020 Hb_061466_020--Hb_015928_020 Hb_000997_010 Hb_000997_010 Hb_061466_020--Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_061466_020--Hb_014361_050 Hb_061466_020--Hb_167508_010 Hb_061466_020--Hb_129459_010 Hb_005517_010 Hb_005517_010 Hb_061466_020--Hb_005517_010 Hb_000003_140 Hb_000003_140 Hb_167508_010--Hb_000003_140 Hb_167508_010--Hb_129459_010 Hb_099990_030 Hb_099990_030 Hb_167508_010--Hb_099990_030 Hb_000189_430 Hb_000189_430 Hb_167508_010--Hb_000189_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46252 1.13201 1.13325 0.912371 1.46971 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis