Hb_133605_010

Information

Type -
Description -
Location Contig133605: 268-1461
Sequence    

Annotation

kegg
ID pop:POPTR_0006s28640g
description POPTRDRAFT_562056; NBS-LRR resistance protein RGH2
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rga2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133605_010 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_000406_010 0.189909295 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
3 Hb_188411_010 0.1909021128 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
4 Hb_031403_030 0.2396403245 - - -
5 Hb_003740_010 0.2516387654 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002570_010 0.2616133341 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
7 Hb_161023_010 0.2650549259 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
8 Hb_160233_020 0.2655194415 - - -
9 Hb_000413_150 0.2657294353 - - PREDICTED: uncharacterized protein LOC103709996 [Phoenix dactylifera]
10 Hb_093385_010 0.2658618665 - - PREDICTED: probable mannitol dehydrogenase [Pyrus x bretschneideri]
11 Hb_001862_080 0.2676856753 - - hypothetical protein RCOM_1154950 [Ricinus communis]
12 Hb_114638_010 0.2771847908 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
13 Hb_005504_020 0.281635654 - - -
14 Hb_002217_410 0.2820946238 - - hypothetical protein L484_027883 [Morus notabilis]
15 Hb_135569_010 0.2882471609 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
16 Hb_014919_020 0.2920135922 - - -
17 Hb_006286_010 0.2920424942 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
18 Hb_002627_070 0.2937782511 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000197_110 0.2959109525 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000302_070 0.2968949854 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_133605_010 Hb_133605_010 Hb_000406_010 Hb_000406_010 Hb_133605_010--Hb_000406_010 Hb_188411_010 Hb_188411_010 Hb_133605_010--Hb_188411_010 Hb_031403_030 Hb_031403_030 Hb_133605_010--Hb_031403_030 Hb_003740_010 Hb_003740_010 Hb_133605_010--Hb_003740_010 Hb_002570_010 Hb_002570_010 Hb_133605_010--Hb_002570_010 Hb_161023_010 Hb_161023_010 Hb_133605_010--Hb_161023_010 Hb_093385_010 Hb_093385_010 Hb_000406_010--Hb_093385_010 Hb_000406_010--Hb_188411_010 Hb_000413_150 Hb_000413_150 Hb_000406_010--Hb_000413_150 Hb_002343_030 Hb_002343_030 Hb_000406_010--Hb_002343_030 Hb_000197_170 Hb_000197_170 Hb_000406_010--Hb_000197_170 Hb_188411_010--Hb_161023_010 Hb_160233_020 Hb_160233_020 Hb_188411_010--Hb_160233_020 Hb_014919_020 Hb_014919_020 Hb_188411_010--Hb_014919_020 Hb_011903_010 Hb_011903_010 Hb_188411_010--Hb_011903_010 Hb_025905_010 Hb_025905_010 Hb_031403_030--Hb_025905_010 Hb_092062_010 Hb_092062_010 Hb_031403_030--Hb_092062_010 Hb_000197_110 Hb_000197_110 Hb_031403_030--Hb_000197_110 Hb_001758_130 Hb_001758_130 Hb_031403_030--Hb_001758_130 Hb_000914_050 Hb_000914_050 Hb_031403_030--Hb_000914_050 Hb_059301_010 Hb_059301_010 Hb_003740_010--Hb_059301_010 Hb_003740_010--Hb_160233_020 Hb_003740_010--Hb_014919_020 Hb_000816_010 Hb_000816_010 Hb_003740_010--Hb_000816_010 Hb_003740_010--Hb_188411_010 Hb_001367_010 Hb_001367_010 Hb_002570_010--Hb_001367_010 Hb_000979_010 Hb_000979_010 Hb_002570_010--Hb_000979_010 Hb_091761_010 Hb_091761_010 Hb_002570_010--Hb_091761_010 Hb_005618_060 Hb_005618_060 Hb_002570_010--Hb_005618_060 Hb_000200_070 Hb_000200_070 Hb_002570_010--Hb_000200_070 Hb_114638_010 Hb_114638_010 Hb_002570_010--Hb_114638_010 Hb_161023_010--Hb_160233_020 Hb_001214_170 Hb_001214_170 Hb_161023_010--Hb_001214_170 Hb_161023_010--Hb_014919_020 Hb_061466_020 Hb_061466_020 Hb_161023_010--Hb_061466_020 Hb_167508_010 Hb_167508_010 Hb_161023_010--Hb_167508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.390844 0.354807 0.785804 1.29225 1.05677 0.0172026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0724464

CAGE analysis