Hb_000200_070

Information

Type -
Description -
Location Contig200: 72967-81715
Sequence    

Annotation

kegg
ID tcc:TCM_009019
description Phosphatidyl serine synthase family protein isoform 1
nr
ID XP_012075699.1
description PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X1 [Jatropha curcas]
swissprot
ID F4HXY7
description CDP-diacylglycerol--serine O-phosphatidyltransferase 1 OS=Arabidopsis thaliana GN=PSS1 PE=1 SV=1
trembl
ID A0A067KJ00
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09291 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cdp-diacylglycerol--serine o-phosphatidyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20189: 73041-73844 , PASA_asmbl_20190: 74215-74322 , PASA_asmbl_20191: 74597-74840 , PASA_asmbl_20195: 79025-81357 , PASA_asmbl_20196: 79806-79952
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000200_070 0.0 - - PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X1 [Jatropha curcas]
2 Hb_003449_060 0.1622522949 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
3 Hb_003688_010 0.1926906984 - - PREDICTED: PLASMODESMATA CALLOSE-BINDING PROTEIN 3-like [Jatropha curcas]
4 Hb_001367_010 0.1950169741 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
5 Hb_000197_110 0.2047312051 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004052_180 0.2076709335 - - PREDICTED: protein COBRA-like [Jatropha curcas]
7 Hb_001623_080 0.2078123482 - - calcineurin-like phosphoesterase [Manihot esculenta]
8 Hb_012762_060 0.2086675688 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
9 Hb_003605_040 0.2087375675 - - PREDICTED: somatic embryogenesis receptor kinase 2 isoform X1 [Jatropha curcas]
10 Hb_008119_030 0.2132584081 - - PREDICTED: peroxidase 63-like [Jatropha curcas]
11 Hb_018133_100 0.2144476432 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000977_200 0.2146380109 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Jatropha curcas]
13 Hb_004899_340 0.2174098529 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
14 Hb_000330_020 0.2188106238 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
15 Hb_000844_030 0.2197397373 - - ent-kaurene oxidase, putative [Ricinus communis]
16 Hb_000963_050 0.2198700146 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
17 Hb_002026_020 0.221440213 - - hypothetical protein POPTR_0012s129501g, partial [Populus trichocarpa]
18 Hb_002488_010 0.2223111586 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
19 Hb_001195_130 0.2224587244 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003680_030 0.2233300619 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000200_070 Hb_000200_070 Hb_003449_060 Hb_003449_060 Hb_000200_070--Hb_003449_060 Hb_003688_010 Hb_003688_010 Hb_000200_070--Hb_003688_010 Hb_001367_010 Hb_001367_010 Hb_000200_070--Hb_001367_010 Hb_000197_110 Hb_000197_110 Hb_000200_070--Hb_000197_110 Hb_004052_180 Hb_004052_180 Hb_000200_070--Hb_004052_180 Hb_001623_080 Hb_001623_080 Hb_000200_070--Hb_001623_080 Hb_154114_030 Hb_154114_030 Hb_003449_060--Hb_154114_030 Hb_002475_120 Hb_002475_120 Hb_003449_060--Hb_002475_120 Hb_003449_060--Hb_000197_110 Hb_004374_130 Hb_004374_130 Hb_003449_060--Hb_004374_130 Hb_003449_060--Hb_001367_010 Hb_004586_040 Hb_004586_040 Hb_003688_010--Hb_004586_040 Hb_000544_200 Hb_000544_200 Hb_003688_010--Hb_000544_200 Hb_118283_010 Hb_118283_010 Hb_003688_010--Hb_118283_010 Hb_000668_060 Hb_000668_060 Hb_003688_010--Hb_000668_060 Hb_001488_290 Hb_001488_290 Hb_003688_010--Hb_001488_290 Hb_012286_060 Hb_012286_060 Hb_003688_010--Hb_012286_060 Hb_002570_010 Hb_002570_010 Hb_001367_010--Hb_002570_010 Hb_000979_010 Hb_000979_010 Hb_001367_010--Hb_000979_010 Hb_091761_010 Hb_091761_010 Hb_001367_010--Hb_091761_010 Hb_001367_010--Hb_000197_110 Hb_009249_020 Hb_009249_020 Hb_000197_110--Hb_009249_020 Hb_000197_110--Hb_004374_130 Hb_031403_030 Hb_031403_030 Hb_000197_110--Hb_031403_030 Hb_004907_090 Hb_004907_090 Hb_004052_180--Hb_004907_090 Hb_000562_100 Hb_000562_100 Hb_004052_180--Hb_000562_100 Hb_000001_090 Hb_000001_090 Hb_004052_180--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_004052_180--Hb_001053_080 Hb_000959_300 Hb_000959_300 Hb_004052_180--Hb_000959_300 Hb_002488_010 Hb_002488_010 Hb_004052_180--Hb_002488_010 Hb_001049_150 Hb_001049_150 Hb_001623_080--Hb_001049_150 Hb_001976_060 Hb_001976_060 Hb_001623_080--Hb_001976_060 Hb_004899_340 Hb_004899_340 Hb_001623_080--Hb_004899_340 Hb_001623_080--Hb_000959_300 Hb_000665_190 Hb_000665_190 Hb_001623_080--Hb_000665_190 Hb_011021_010 Hb_011021_010 Hb_001623_080--Hb_011021_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58109 0.7303 4.88468 9.20886 3.16562 1.25004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.426578 0.167819 0.0706337 0.326552 2.55805

CAGE analysis