Hb_154114_030

Information

Type -
Description -
Location Contig154114: 13536-16130
Sequence    

Annotation

kegg
ID rcu:RCOM_1505120
description amino acid binding protein, putative
nr
ID XP_002511139.1
description amino acid binding protein, putative [Ricinus communis]
swissprot
ID Q9SGA0
description ACT domain-containing protein ACR6 OS=Arabidopsis thaliana GN=ACR6 PE=2 SV=1
trembl
ID B9RAB4
description Amino acid binding protein, putative OS=Ricinus communis GN=RCOM_1505120 PE=4 SV=1
Gene Ontology
ID GO:0016597
description amino acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13323: 13636-15177 , PASA_asmbl_13324: 15231-16169 , PASA_asmbl_13325: 15309-16327
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154114_030 0.0 - - amino acid binding protein, putative [Ricinus communis]
2 Hb_003449_060 0.1301658337 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
3 Hb_002475_120 0.1873925668 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
4 Hb_001269_310 0.2022388507 - - PREDICTED: probable CCR4-associated factor 1 homolog 6 [Jatropha curcas]
5 Hb_012586_050 0.2042294841 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
6 Hb_004907_090 0.2123018204 - - ATP binding protein, putative [Ricinus communis]
7 Hb_002151_010 0.2133754817 - - hypothetical protein POPTR_0006s14610g [Populus trichocarpa]
8 Hb_114638_010 0.2223074701 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
9 Hb_000200_070 0.2303971659 - - PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X1 [Jatropha curcas]
10 Hb_000175_630 0.2338911673 - - PREDICTED: pentatricopeptide repeat-containing protein At5g11310, mitochondrial [Jatropha curcas]
11 Hb_004223_110 0.2355329542 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
12 Hb_004374_130 0.2362593479 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
13 Hb_004052_180 0.2364299124 - - PREDICTED: protein COBRA-like [Jatropha curcas]
14 Hb_000207_190 0.2381701617 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
15 Hb_001021_160 0.2386077664 - - PREDICTED: homeobox protein LUMINIDEPENDENS [Jatropha curcas]
16 Hb_002447_020 0.2399739009 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000205_150 0.2400855414 - - PREDICTED: uncharacterized protein LOC105647752 [Jatropha curcas]
18 Hb_000211_040 0.2412825468 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
19 Hb_143766_020 0.2422075527 - - putative phospholipase A2 [Gossypium arboreum]
20 Hb_018133_100 0.2440371668 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_154114_030 Hb_154114_030 Hb_003449_060 Hb_003449_060 Hb_154114_030--Hb_003449_060 Hb_002475_120 Hb_002475_120 Hb_154114_030--Hb_002475_120 Hb_001269_310 Hb_001269_310 Hb_154114_030--Hb_001269_310 Hb_012586_050 Hb_012586_050 Hb_154114_030--Hb_012586_050 Hb_004907_090 Hb_004907_090 Hb_154114_030--Hb_004907_090 Hb_002151_010 Hb_002151_010 Hb_154114_030--Hb_002151_010 Hb_000200_070 Hb_000200_070 Hb_003449_060--Hb_000200_070 Hb_003449_060--Hb_002475_120 Hb_000197_110 Hb_000197_110 Hb_003449_060--Hb_000197_110 Hb_004374_130 Hb_004374_130 Hb_003449_060--Hb_004374_130 Hb_001367_010 Hb_001367_010 Hb_003449_060--Hb_001367_010 Hb_006816_330 Hb_006816_330 Hb_002475_120--Hb_006816_330 Hb_008511_060 Hb_008511_060 Hb_002475_120--Hb_008511_060 Hb_004052_070 Hb_004052_070 Hb_002475_120--Hb_004052_070 Hb_001021_160 Hb_001021_160 Hb_002475_120--Hb_001021_160 Hb_002475_120--Hb_012586_050 Hb_149838_010 Hb_149838_010 Hb_002475_120--Hb_149838_010 Hb_000997_150 Hb_000997_150 Hb_001269_310--Hb_000997_150 Hb_004223_110 Hb_004223_110 Hb_001269_310--Hb_004223_110 Hb_001051_090 Hb_001051_090 Hb_001269_310--Hb_001051_090 Hb_002400_230 Hb_002400_230 Hb_001269_310--Hb_002400_230 Hb_000175_630 Hb_000175_630 Hb_001269_310--Hb_000175_630 Hb_003026_030 Hb_003026_030 Hb_001269_310--Hb_003026_030 Hb_002232_190 Hb_002232_190 Hb_012586_050--Hb_002232_190 Hb_000139_220 Hb_000139_220 Hb_012586_050--Hb_000139_220 Hb_000453_040 Hb_000453_040 Hb_012586_050--Hb_000453_040 Hb_012586_050--Hb_004223_110 Hb_019715_010 Hb_019715_010 Hb_012586_050--Hb_019715_010 Hb_000599_170 Hb_000599_170 Hb_012586_050--Hb_000599_170 Hb_004052_180 Hb_004052_180 Hb_004907_090--Hb_004052_180 Hb_007594_080 Hb_007594_080 Hb_004907_090--Hb_007594_080 Hb_004013_030 Hb_004013_030 Hb_004907_090--Hb_004013_030 Hb_006816_190 Hb_006816_190 Hb_004907_090--Hb_006816_190 Hb_000001_090 Hb_000001_090 Hb_004907_090--Hb_000001_090 Hb_002686_300 Hb_002686_300 Hb_004907_090--Hb_002686_300 Hb_004158_050 Hb_004158_050 Hb_002151_010--Hb_004158_050 Hb_000120_350 Hb_000120_350 Hb_002151_010--Hb_000120_350 Hb_002900_150 Hb_002900_150 Hb_002151_010--Hb_002900_150 Hb_004324_210 Hb_004324_210 Hb_002151_010--Hb_004324_210 Hb_002151_010--Hb_004907_090 Hb_000984_220 Hb_000984_220 Hb_002151_010--Hb_000984_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24974 1.36514 7.98164 5.48356 7.788 2.23842
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.439516 0.576251 0.269116 0.299639 2.51585

CAGE analysis