Hb_012586_050

Information

Type -
Description -
Location Contig12586: 34429-39037
Sequence    

Annotation

kegg
ID pmum:103323408
description triosephosphate isomerase, cytosolic
nr
ID XP_008223629.1
description PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
swissprot
ID P48495
description Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1
trembl
ID M5VZS0
description Triosephosphate isomerase OS=Prunus persica GN=PRUPE_ppa010312mg PE=3 SV=1
Gene Ontology
ID GO:0005618
description triosephosphate cytosolic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07904: 34387-38865 , PASA_asmbl_07905: 36276-36427
cDNA
(Sanger)
(ID:Location)		 013_D24.ab1: 34836-38865

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012586_050 0.0 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
2 Hb_002232_190 0.1257584857 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000139_220 0.1322725536 - - leucine rich repeat-containing protein, putative [Ricinus communis]
4 Hb_000453_040 0.1362160933 - - Triosephosphate isomerase, cytosolic [Gossypium arboreum]
5 Hb_004223_110 0.1391623838 - - PREDICTED: putative HVA22-like protein g [Populus euphratica]
6 Hb_019715_010 0.1444052 - - carbon catabolite repressor protein, putative [Ricinus communis]
7 Hb_000599_170 0.1464394353 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like isoform X2 [Populus euphratica]
8 Hb_143766_020 0.1483985456 - - putative phospholipase A2 [Gossypium arboreum]
9 Hb_000589_190 0.1494630486 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
10 Hb_002805_060 0.1497432201 - - PREDICTED: signal peptide peptidase [Jatropha curcas]
11 Hb_011249_030 0.1502119162 - - PREDICTED: uncharacterized protein LOC105641285 [Jatropha curcas]
12 Hb_008921_010 0.1517653586 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
13 Hb_004725_030 0.1533727009 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X4 [Jatropha curcas]
14 Hb_000077_120 0.1543809809 - - PREDICTED: two pore calcium channel protein 1 [Jatropha curcas]
15 Hb_027380_030 0.1560289239 - - Endoplasmic oxidoreductin-1 precursor, putative [Ricinus communis]
16 Hb_006816_330 0.1586065572 - - exonuclease, putative [Ricinus communis]
17 Hb_000608_350 0.1598789552 - - PREDICTED: ER membrane protein complex subunit 10 [Jatropha curcas]
18 Hb_002291_060 0.1622339201 - - PREDICTED: splicing factor 3A subunit 3-like isoform X1 [Fragaria vesca subsp. vesca]
19 Hb_015292_040 0.162464407 - - PREDICTED: myb-like protein X [Jatropha curcas]
20 Hb_002870_020 0.1629890489 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012586_050 Hb_012586_050 Hb_002232_190 Hb_002232_190 Hb_012586_050--Hb_002232_190 Hb_000139_220 Hb_000139_220 Hb_012586_050--Hb_000139_220 Hb_000453_040 Hb_000453_040 Hb_012586_050--Hb_000453_040 Hb_004223_110 Hb_004223_110 Hb_012586_050--Hb_004223_110 Hb_019715_010 Hb_019715_010 Hb_012586_050--Hb_019715_010 Hb_000599_170 Hb_000599_170 Hb_012586_050--Hb_000599_170 Hb_011249_030 Hb_011249_030 Hb_002232_190--Hb_011249_030 Hb_000287_050 Hb_000287_050 Hb_002232_190--Hb_000287_050 Hb_002232_190--Hb_000453_040 Hb_029142_030 Hb_029142_030 Hb_002232_190--Hb_029142_030 Hb_002042_030 Hb_002042_030 Hb_002232_190--Hb_002042_030 Hb_098315_070 Hb_098315_070 Hb_002232_190--Hb_098315_070 Hb_000077_120 Hb_000077_120 Hb_000139_220--Hb_000077_120 Hb_002291_060 Hb_002291_060 Hb_000139_220--Hb_002291_060 Hb_000940_050 Hb_000940_050 Hb_000139_220--Hb_000940_050 Hb_009449_060 Hb_009449_060 Hb_000139_220--Hb_009449_060 Hb_172257_010 Hb_172257_010 Hb_000139_220--Hb_172257_010 Hb_000589_190 Hb_000589_190 Hb_000139_220--Hb_000589_190 Hb_003994_140 Hb_003994_140 Hb_000453_040--Hb_003994_140 Hb_000453_040--Hb_002042_030 Hb_000608_350 Hb_000608_350 Hb_000453_040--Hb_000608_350 Hb_000453_040--Hb_098315_070 Hb_000138_130 Hb_000138_130 Hb_000453_040--Hb_000138_130 Hb_007163_060 Hb_007163_060 Hb_004223_110--Hb_007163_060 Hb_004223_110--Hb_000608_350 Hb_008921_010 Hb_008921_010 Hb_004223_110--Hb_008921_010 Hb_004223_110--Hb_172257_010 Hb_004223_110--Hb_000589_190 Hb_005322_050 Hb_005322_050 Hb_004223_110--Hb_005322_050 Hb_019715_010--Hb_011249_030 Hb_001277_280 Hb_001277_280 Hb_019715_010--Hb_001277_280 Hb_005463_130 Hb_005463_130 Hb_019715_010--Hb_005463_130 Hb_004342_020 Hb_004342_020 Hb_019715_010--Hb_004342_020 Hb_019715_010--Hb_000287_050 Hb_000012_270 Hb_000012_270 Hb_019715_010--Hb_000012_270 Hb_027380_030 Hb_027380_030 Hb_000599_170--Hb_027380_030 Hb_002805_060 Hb_002805_060 Hb_000599_170--Hb_002805_060 Hb_003894_040 Hb_003894_040 Hb_000599_170--Hb_003894_040 Hb_001051_090 Hb_001051_090 Hb_000599_170--Hb_001051_090 Hb_006915_020 Hb_006915_020 Hb_000599_170--Hb_006915_020 Hb_002092_100 Hb_002092_100 Hb_000599_170--Hb_002092_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
75.0778 79.7985 336.003 121.849 188.509 139.376
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.8484 32.4976 52.4452 44.1774 75.6788

CAGE analysis