Hb_003449_060

Information

Type -
Description -
Location Contig3449: 90887-94243
Sequence    

Annotation

kegg
ID rcu:RCOM_1223920
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_012089872.1
description PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
swissprot
ID Q00624
description L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1
trembl
ID A0A067JFZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01829 PE=4 SV=1
Gene Ontology
ID GO:0005507
description l-ascorbate oxidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35966: 90789-93130 , PASA_asmbl_35967: 93157-94151
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003449_060 0.0 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
2 Hb_154114_030 0.1301658337 - - amino acid binding protein, putative [Ricinus communis]
3 Hb_000200_070 0.1622522949 - - PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X1 [Jatropha curcas]
4 Hb_002475_120 0.1956239612 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
5 Hb_000197_110 0.1985491286 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004374_130 0.1997285209 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
7 Hb_001367_010 0.1998962385 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
8 Hb_114638_010 0.2054508226 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
9 Hb_000853_260 0.2112626868 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
10 Hb_004052_180 0.2169093917 - - PREDICTED: protein COBRA-like [Jatropha curcas]
11 Hb_091761_010 0.2196804925 - - Rhomboid protein, putative [Ricinus communis]
12 Hb_004907_090 0.2204054889 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000207_190 0.2219288861 - - PREDICTED: uncharacterized protein LOC105632052 [Jatropha curcas]
14 Hb_133230_010 0.2254024286 - - hypothetical protein L484_001846 [Morus notabilis]
15 Hb_001882_110 0.2264146712 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
16 Hb_008511_060 0.2279103736 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
17 Hb_002092_110 0.2307973926 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 1 [Jatropha curcas]
18 Hb_006816_330 0.2321566808 - - exonuclease, putative [Ricinus communis]
19 Hb_000579_060 0.2371568219 - - PREDICTED: uncharacterized protein LOC105633849 isoform X1 [Jatropha curcas]
20 Hb_009189_020 0.2383024135 - - PREDICTED: CASP-like protein 4B4 [Jatropha curcas]

Gene co-expression network

sample Hb_003449_060 Hb_003449_060 Hb_154114_030 Hb_154114_030 Hb_003449_060--Hb_154114_030 Hb_000200_070 Hb_000200_070 Hb_003449_060--Hb_000200_070 Hb_002475_120 Hb_002475_120 Hb_003449_060--Hb_002475_120 Hb_000197_110 Hb_000197_110 Hb_003449_060--Hb_000197_110 Hb_004374_130 Hb_004374_130 Hb_003449_060--Hb_004374_130 Hb_001367_010 Hb_001367_010 Hb_003449_060--Hb_001367_010 Hb_154114_030--Hb_002475_120 Hb_001269_310 Hb_001269_310 Hb_154114_030--Hb_001269_310 Hb_012586_050 Hb_012586_050 Hb_154114_030--Hb_012586_050 Hb_004907_090 Hb_004907_090 Hb_154114_030--Hb_004907_090 Hb_002151_010 Hb_002151_010 Hb_154114_030--Hb_002151_010 Hb_003688_010 Hb_003688_010 Hb_000200_070--Hb_003688_010 Hb_000200_070--Hb_001367_010 Hb_000200_070--Hb_000197_110 Hb_004052_180 Hb_004052_180 Hb_000200_070--Hb_004052_180 Hb_001623_080 Hb_001623_080 Hb_000200_070--Hb_001623_080 Hb_006816_330 Hb_006816_330 Hb_002475_120--Hb_006816_330 Hb_008511_060 Hb_008511_060 Hb_002475_120--Hb_008511_060 Hb_004052_070 Hb_004052_070 Hb_002475_120--Hb_004052_070 Hb_001021_160 Hb_001021_160 Hb_002475_120--Hb_001021_160 Hb_002475_120--Hb_012586_050 Hb_149838_010 Hb_149838_010 Hb_002475_120--Hb_149838_010 Hb_000197_110--Hb_001367_010 Hb_009249_020 Hb_009249_020 Hb_000197_110--Hb_009249_020 Hb_000197_110--Hb_004374_130 Hb_031403_030 Hb_031403_030 Hb_000197_110--Hb_031403_030 Hb_009189_020 Hb_009189_020 Hb_004374_130--Hb_009189_020 Hb_009393_200 Hb_009393_200 Hb_004374_130--Hb_009393_200 Hb_008054_050 Hb_008054_050 Hb_004374_130--Hb_008054_050 Hb_009222_070 Hb_009222_070 Hb_004374_130--Hb_009222_070 Hb_145317_010 Hb_145317_010 Hb_004374_130--Hb_145317_010 Hb_083628_010 Hb_083628_010 Hb_004374_130--Hb_083628_010 Hb_002570_010 Hb_002570_010 Hb_001367_010--Hb_002570_010 Hb_000979_010 Hb_000979_010 Hb_001367_010--Hb_000979_010 Hb_091761_010 Hb_091761_010 Hb_001367_010--Hb_091761_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.9742 1.48054 10.7249 13.5358 12.2553 5.19174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.777982 0.89037 0.105412 1.06309 4.97271

CAGE analysis