Hb_001367_010

Information

Type -
Description -
Location Contig1367: 12148-16607
Sequence    

Annotation

kegg
ID rcu:RCOM_0412680
description hypothetical protein
nr
ID XP_012087674.1
description PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
swissprot
ID Q8W486
description Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=2 SV=1
trembl
ID B9T695
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0412680 PE=4 SV=1
Gene Ontology
ID GO:0016740
description o-fucosyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001367_010 0.0 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
2 Hb_002570_010 0.1203287302 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
3 Hb_000979_010 0.1440305674 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
4 Hb_091761_010 0.1675423263 - - Rhomboid protein, putative [Ricinus communis]
5 Hb_000200_070 0.1950169741 - - PREDICTED: CDP-diacylglycerol--serine O-phosphatidyltransferase 1 isoform X1 [Jatropha curcas]
6 Hb_003449_060 0.1998962385 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
7 Hb_000197_110 0.2036101628 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005618_060 0.212091685 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
9 Hb_000359_300 0.218818612 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Zea mays]
10 Hb_004374_130 0.2238389478 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
11 Hb_000544_180 0.2287480497 - - PREDICTED: probable auxin efflux carrier component 1c isoform X1 [Jatropha curcas]
12 Hb_005843_160 0.2302241382 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
13 Hb_000091_060 0.2350573819 - - PREDICTED: galactose oxidase [Jatropha curcas]
14 Hb_008511_060 0.2403620936 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At4g34500 [Jatropha curcas]
15 Hb_007749_010 0.2404262662 - - -
16 Hb_001474_040 0.2434837717 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
17 Hb_000281_060 0.2449003258 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_002475_120 0.2461455253 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
19 Hb_114638_010 0.2499649387 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Jatropha curcas]
20 Hb_004657_090 0.2517135167 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001367_010 Hb_001367_010 Hb_002570_010 Hb_002570_010 Hb_001367_010--Hb_002570_010 Hb_000979_010 Hb_000979_010 Hb_001367_010--Hb_000979_010 Hb_091761_010 Hb_091761_010 Hb_001367_010--Hb_091761_010 Hb_000200_070 Hb_000200_070 Hb_001367_010--Hb_000200_070 Hb_003449_060 Hb_003449_060 Hb_001367_010--Hb_003449_060 Hb_000197_110 Hb_000197_110 Hb_001367_010--Hb_000197_110 Hb_002570_010--Hb_000979_010 Hb_002570_010--Hb_091761_010 Hb_005618_060 Hb_005618_060 Hb_002570_010--Hb_005618_060 Hb_002570_010--Hb_000200_070 Hb_114638_010 Hb_114638_010 Hb_002570_010--Hb_114638_010 Hb_000979_010--Hb_005618_060 Hb_000979_010--Hb_091761_010 Hb_000640_140 Hb_000640_140 Hb_000979_010--Hb_000640_140 Hb_002235_270 Hb_002235_270 Hb_000979_010--Hb_002235_270 Hb_005843_160 Hb_005843_160 Hb_091761_010--Hb_005843_160 Hb_000091_060 Hb_000091_060 Hb_091761_010--Hb_000091_060 Hb_008511_060 Hb_008511_060 Hb_091761_010--Hb_008511_060 Hb_000200_070--Hb_003449_060 Hb_003688_010 Hb_003688_010 Hb_000200_070--Hb_003688_010 Hb_000200_070--Hb_000197_110 Hb_004052_180 Hb_004052_180 Hb_000200_070--Hb_004052_180 Hb_001623_080 Hb_001623_080 Hb_000200_070--Hb_001623_080 Hb_154114_030 Hb_154114_030 Hb_003449_060--Hb_154114_030 Hb_002475_120 Hb_002475_120 Hb_003449_060--Hb_002475_120 Hb_003449_060--Hb_000197_110 Hb_004374_130 Hb_004374_130 Hb_003449_060--Hb_004374_130 Hb_009249_020 Hb_009249_020 Hb_000197_110--Hb_009249_020 Hb_000197_110--Hb_004374_130 Hb_031403_030 Hb_031403_030 Hb_000197_110--Hb_031403_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10271 0.587944 2.6721 6.07386 2.76202 1.95909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.130317 0 0.144256 0.122831 1.28487

CAGE analysis