Hb_000640_140

Information

Type -
Description -
Location Contig640: 106039-106878
Sequence    

Annotation

kegg
ID rcu:RCOM_1347000
description hypothetical protein
nr
ID XP_002515277.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RND8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1347000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52091: 106054-106188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000640_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000979_010 0.2307728319 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
3 Hb_000424_080 0.2546496766 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
4 Hb_000033_070 0.260750203 - - unnamed protein product [Oryza sativa Japonica Group]
5 Hb_000359_300 0.2679085885 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Zea mays]
6 Hb_001367_010 0.2725659118 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
7 Hb_002265_030 0.2771227603 - - PREDICTED: LOW QUALITY PROTEIN: probable calcium-binding protein CML49-like [Glycine max]
8 Hb_001001_050 0.2856568416 - - CXE protein [Hevea brasiliensis]
9 Hb_005129_010 0.2863232327 - - hypothetical protein VITISV_026364 [Vitis vinifera]
10 Hb_004724_470 0.2891802075 - - Nitrilase, putative [Ricinus communis]
11 Hb_094437_040 0.2897824081 - - ankyrin repeat family protein, partial [Manihot esculenta]
12 Hb_002235_270 0.2906188978 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
13 Hb_004324_240 0.292322473 - - tetrahydrofolylpolyglutamate synthase, putative [Ricinus communis]
14 Hb_000522_140 0.2929326239 - - protein transporter, putative [Ricinus communis]
15 Hb_000258_290 0.2974471551 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
16 Hb_005618_060 0.3028883947 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
17 Hb_000281_060 0.3029473179 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_074979_030 0.3047498135 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
19 Hb_000139_110 0.309197292 - - PREDICTED: mavicyanin [Jatropha curcas]
20 Hb_089971_010 0.3094878427 - - PREDICTED: (S)-coclaurine N-methyltransferase [Cucumis sativus]

Gene co-expression network

sample Hb_000640_140 Hb_000640_140 Hb_000979_010 Hb_000979_010 Hb_000640_140--Hb_000979_010 Hb_000424_080 Hb_000424_080 Hb_000640_140--Hb_000424_080 Hb_000033_070 Hb_000033_070 Hb_000640_140--Hb_000033_070 Hb_000359_300 Hb_000359_300 Hb_000640_140--Hb_000359_300 Hb_001367_010 Hb_001367_010 Hb_000640_140--Hb_001367_010 Hb_002265_030 Hb_002265_030 Hb_000640_140--Hb_002265_030 Hb_000979_010--Hb_001367_010 Hb_005618_060 Hb_005618_060 Hb_000979_010--Hb_005618_060 Hb_002570_010 Hb_002570_010 Hb_000979_010--Hb_002570_010 Hb_091761_010 Hb_091761_010 Hb_000979_010--Hb_091761_010 Hb_002235_270 Hb_002235_270 Hb_000979_010--Hb_002235_270 Hb_001001_050 Hb_001001_050 Hb_000424_080--Hb_001001_050 Hb_145655_010 Hb_145655_010 Hb_000424_080--Hb_145655_010 Hb_022174_010 Hb_022174_010 Hb_000424_080--Hb_022174_010 Hb_000424_080--Hb_002235_270 Hb_000424_080--Hb_000979_010 Hb_005129_010 Hb_005129_010 Hb_000033_070--Hb_005129_010 Hb_068569_010 Hb_068569_010 Hb_000033_070--Hb_068569_010 Hb_010964_020 Hb_010964_020 Hb_000033_070--Hb_010964_020 Hb_006794_010 Hb_006794_010 Hb_000033_070--Hb_006794_010 Hb_003025_060 Hb_003025_060 Hb_000033_070--Hb_003025_060 Hb_035436_010 Hb_035436_010 Hb_000033_070--Hb_035436_010 Hb_000359_300--Hb_001367_010 Hb_000359_300--Hb_000979_010 Hb_010883_140 Hb_010883_140 Hb_000359_300--Hb_010883_140 Hb_000359_300--Hb_002570_010 Hb_000139_110 Hb_000139_110 Hb_000359_300--Hb_000139_110 Hb_054541_010 Hb_054541_010 Hb_000359_300--Hb_054541_010 Hb_001367_010--Hb_002570_010 Hb_001367_010--Hb_091761_010 Hb_000200_070 Hb_000200_070 Hb_001367_010--Hb_000200_070 Hb_003449_060 Hb_003449_060 Hb_001367_010--Hb_003449_060 Hb_000197_110 Hb_000197_110 Hb_001367_010--Hb_000197_110 Hb_005054_050 Hb_005054_050 Hb_002265_030--Hb_005054_050 Hb_000329_420 Hb_000329_420 Hb_002265_030--Hb_000329_420 Hb_000215_260 Hb_000215_260 Hb_002265_030--Hb_000215_260 Hb_004324_240 Hb_004324_240 Hb_002265_030--Hb_004324_240 Hb_001450_100 Hb_001450_100 Hb_002265_030--Hb_001450_100 Hb_000522_140 Hb_000522_140 Hb_002265_030--Hb_000522_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.45853 0.0230525 0.510442 3.86975 1.23201 3.60949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0904109 0.0201107 1.20443

CAGE analysis