Hb_000424_080

Information

Type -
Description -
Location Contig424: 113774-115952
Sequence    

Annotation

kegg
ID rcu:RCOM_0707630
description endo-1,4-beta-glucanase, putative (EC:3.2.1.4)
nr
ID XP_012077550.1
description PREDICTED: endoglucanase 16 [Jatropha curcas]
swissprot
ID Q8VYG3
description Endoglucanase 16 OS=Arabidopsis thaliana GN=At3g43860 PE=2 SV=1
trembl
ID B9RQY0
description Endoglucanase OS=Ricinus communis GN=RCOM_0707630 PE=3 SV=1
Gene Ontology
ID GO:0004553
description endoglucanase 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41911: 114022-116218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_080 0.0 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
2 Hb_001001_050 0.1694358139 - - CXE protein [Hevea brasiliensis]
3 Hb_145655_010 0.244118764 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
4 Hb_022174_010 0.2487990415 - - elicitor-responsive protein [Hevea brasiliensis]
5 Hb_002235_270 0.2512905386 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
6 Hb_000640_140 0.2546496766 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000979_010 0.2552018238 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
8 Hb_013399_080 0.258619009 - - PREDICTED: protein Brevis radix-like 2 [Jatropha curcas]
9 Hb_019592_010 0.2592958091 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
10 Hb_000505_070 0.2612952405 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
11 Hb_001367_010 0.2637562679 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
12 Hb_128496_010 0.2646476764 - - unnamed protein product [Vitis vinifera]
13 Hb_007749_010 0.2654158056 - - -
14 Hb_000684_130 0.2705419146 - - -
15 Hb_002863_090 0.2771528611 desease resistance Gene Name: Speriolin_N hypothetical protein JCGZ_06191 [Jatropha curcas]
16 Hb_002570_010 0.2816735363 - - hypothetical protein JCGZ_25329 [Jatropha curcas]
17 Hb_000258_150 0.2819333666 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]
18 Hb_029921_020 0.2874077963 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
19 Hb_000668_090 0.2912274888 - - senescence-associated family protein [Populus trichocarpa]
20 Hb_000270_870 0.2942475151 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000424_080 Hb_000424_080 Hb_001001_050 Hb_001001_050 Hb_000424_080--Hb_001001_050 Hb_145655_010 Hb_145655_010 Hb_000424_080--Hb_145655_010 Hb_022174_010 Hb_022174_010 Hb_000424_080--Hb_022174_010 Hb_002235_270 Hb_002235_270 Hb_000424_080--Hb_002235_270 Hb_000640_140 Hb_000640_140 Hb_000424_080--Hb_000640_140 Hb_000979_010 Hb_000979_010 Hb_000424_080--Hb_000979_010 Hb_001001_050--Hb_002235_270 Hb_004449_230 Hb_004449_230 Hb_001001_050--Hb_004449_230 Hb_004064_030 Hb_004064_030 Hb_001001_050--Hb_004064_030 Hb_000668_090 Hb_000668_090 Hb_001001_050--Hb_000668_090 Hb_000964_100 Hb_000964_100 Hb_001001_050--Hb_000964_100 Hb_005539_370 Hb_005539_370 Hb_145655_010--Hb_005539_370 Hb_145655_010--Hb_022174_010 Hb_000174_050 Hb_000174_050 Hb_145655_010--Hb_000174_050 Hb_000522_140 Hb_000522_140 Hb_145655_010--Hb_000522_140 Hb_004225_110 Hb_004225_110 Hb_145655_010--Hb_004225_110 Hb_000258_150 Hb_000258_150 Hb_022174_010--Hb_000258_150 Hb_013399_080 Hb_013399_080 Hb_022174_010--Hb_013399_080 Hb_000069_670 Hb_000069_670 Hb_022174_010--Hb_000069_670 Hb_000096_080 Hb_000096_080 Hb_022174_010--Hb_000096_080 Hb_000207_100 Hb_000207_100 Hb_022174_010--Hb_000207_100 Hb_065841_010 Hb_065841_010 Hb_002235_270--Hb_065841_010 Hb_009102_020 Hb_009102_020 Hb_002235_270--Hb_009102_020 Hb_000311_030 Hb_000311_030 Hb_002235_270--Hb_000311_030 Hb_068569_010 Hb_068569_010 Hb_002235_270--Hb_068569_010 Hb_002235_270--Hb_000979_010 Hb_000640_140--Hb_000979_010 Hb_000033_070 Hb_000033_070 Hb_000640_140--Hb_000033_070 Hb_000359_300 Hb_000359_300 Hb_000640_140--Hb_000359_300 Hb_001367_010 Hb_001367_010 Hb_000640_140--Hb_001367_010 Hb_002265_030 Hb_002265_030 Hb_000640_140--Hb_002265_030 Hb_000979_010--Hb_001367_010 Hb_005618_060 Hb_005618_060 Hb_000979_010--Hb_005618_060 Hb_002570_010 Hb_002570_010 Hb_000979_010--Hb_002570_010 Hb_091761_010 Hb_091761_010 Hb_000979_010--Hb_091761_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.8847 1.16969 4.8298 17.866 3.92026 9.49209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0323462 0.0508944 3.34273 0.213399 3.56224

CAGE analysis