Hb_001001_050

Information

Type -
Description -
Location Contig1001: 38276-39226
Sequence    

Annotation

kegg
ID rcu:RCOM_1591290
description Gibberellin receptor GID1, putative
nr
ID AEP68102.1
description CXE protein [Hevea brasiliensis]
swissprot
ID Q5NUF4
description 2-hydroxyisoflavanone dehydratase OS=Glycyrrhiza echinata GN=HIDM PE=1 SV=1
trembl
ID G5DCY5
description CXE protein OS=Hevea brasiliensis GN=CXE1 PE=2 SV=1
Gene Ontology
ID GO:0016787
description probable carboxylesterase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001001_050 0.0 - - CXE protein [Hevea brasiliensis]
2 Hb_000424_080 0.1694358139 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
3 Hb_002235_270 0.1975600157 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
4 Hb_004449_230 0.2212257806 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_004064_030 0.2239197091 - - aldose-1-epimerase, putative [Ricinus communis]
6 Hb_000668_090 0.2371779807 - - senescence-associated family protein [Populus trichocarpa]
7 Hb_000964_100 0.2803141316 - - PREDICTED: uncharacterized protein LOC105628699 [Jatropha curcas]
8 Hb_019592_010 0.2803394384 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
9 Hb_113084_010 0.2828169492 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
10 Hb_000640_140 0.2856568416 - - conserved hypothetical protein [Ricinus communis]
11 Hb_007749_010 0.2865040293 - - -
12 Hb_000155_060 0.2874144403 - - ATP binding protein, putative [Ricinus communis]
13 Hb_000979_010 0.2887859958 - - PREDICTED: uncharacterized protein LOC105128288 [Populus euphratica]
14 Hb_001367_010 0.2942035825 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
15 Hb_145655_010 0.2983878161 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
16 Hb_123560_030 0.3019819632 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_022174_010 0.3057558397 - - elicitor-responsive protein [Hevea brasiliensis]
18 Hb_000359_300 0.3079151339 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Zea mays]
19 Hb_128496_010 0.3110732315 - - unnamed protein product [Vitis vinifera]
20 Hb_002863_090 0.3149493896 desease resistance Gene Name: Speriolin_N hypothetical protein JCGZ_06191 [Jatropha curcas]

Gene co-expression network

sample Hb_001001_050 Hb_001001_050 Hb_000424_080 Hb_000424_080 Hb_001001_050--Hb_000424_080 Hb_002235_270 Hb_002235_270 Hb_001001_050--Hb_002235_270 Hb_004449_230 Hb_004449_230 Hb_001001_050--Hb_004449_230 Hb_004064_030 Hb_004064_030 Hb_001001_050--Hb_004064_030 Hb_000668_090 Hb_000668_090 Hb_001001_050--Hb_000668_090 Hb_000964_100 Hb_000964_100 Hb_001001_050--Hb_000964_100 Hb_145655_010 Hb_145655_010 Hb_000424_080--Hb_145655_010 Hb_022174_010 Hb_022174_010 Hb_000424_080--Hb_022174_010 Hb_000424_080--Hb_002235_270 Hb_000640_140 Hb_000640_140 Hb_000424_080--Hb_000640_140 Hb_000979_010 Hb_000979_010 Hb_000424_080--Hb_000979_010 Hb_065841_010 Hb_065841_010 Hb_002235_270--Hb_065841_010 Hb_009102_020 Hb_009102_020 Hb_002235_270--Hb_009102_020 Hb_000311_030 Hb_000311_030 Hb_002235_270--Hb_000311_030 Hb_068569_010 Hb_068569_010 Hb_002235_270--Hb_068569_010 Hb_002235_270--Hb_000979_010 Hb_004449_230--Hb_000964_100 Hb_000155_060 Hb_000155_060 Hb_004449_230--Hb_000155_060 Hb_000472_010 Hb_000472_010 Hb_004449_230--Hb_000472_010 Hb_004449_230--Hb_000424_080 Hb_013877_020 Hb_013877_020 Hb_004449_230--Hb_013877_020 Hb_004064_030--Hb_000668_090 Hb_000313_330 Hb_000313_330 Hb_004064_030--Hb_000313_330 Hb_004064_030--Hb_002235_270 Hb_067118_010 Hb_067118_010 Hb_004064_030--Hb_067118_010 Hb_179645_010 Hb_179645_010 Hb_004064_030--Hb_179645_010 Hb_001776_030 Hb_001776_030 Hb_000668_090--Hb_001776_030 Hb_003964_020 Hb_003964_020 Hb_000668_090--Hb_003964_020 Hb_000074_100 Hb_000074_100 Hb_000668_090--Hb_000074_100 Hb_004619_070 Hb_004619_070 Hb_000668_090--Hb_004619_070 Hb_000964_100--Hb_000155_060 Hb_011903_010 Hb_011903_010 Hb_000964_100--Hb_011903_010 Hb_113084_010 Hb_113084_010 Hb_000964_100--Hb_113084_010 Hb_000016_050 Hb_000016_050 Hb_000964_100--Hb_000016_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8103 1.91685 1.98928 23.7217 3.21783 6.60293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.269849 0.0848899 0.622864 0.170907 5.01745

CAGE analysis