Hb_067118_010

Information

Type transcription factor
Description TF Family: MYB
Location Contig67118: 6459-7539
Sequence    

Annotation

kegg
ID rcu:RCOM_0128280
description r2r3-myb transcription factor, putative
nr
ID XP_002530124.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID B9SVV5
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0128280 PE=4 SV=1
Gene Ontology
ID GO:0005488
description transcription factor myb86-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067118_010 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_000313_330 0.1505234069 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
3 Hb_000375_140 0.2137301199 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
4 Hb_006061_030 0.2139980783 - - PREDICTED: fe(2+) transport protein 1-like [Jatropha curcas]
5 Hb_003713_010 0.2190218661 - - conserved hypothetical protein [Ricinus communis]
6 Hb_146255_010 0.2224442173 - - PREDICTED: uncharacterized protein LOC105643649 [Jatropha curcas]
7 Hb_002374_540 0.2254592035 - - RecName: Full=Esterase; AltName: Full=Early nodule-specific protein homolog; AltName: Full=Latex allergen Hev b 13; AltName: Allergen=Hev b 13; Flags: Precursor [Hevea brasiliensis]
8 Hb_000313_080 0.2256939181 rubber biosynthesis Gene Name: CPT3 cis-prenyltransferase 3 [Hevea brasiliensis]
9 Hb_000815_220 0.2267106384 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006586_040 0.2318664076 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
11 Hb_001232_060 0.234588028 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001269_180 0.2391716694 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
13 Hb_003175_120 0.2487474129 - - PREDICTED: uncharacterized protein LOC105141472 isoform X1 [Populus euphratica]
14 Hb_001269_100 0.2491446019 - - plasma membrane ATPase 1, partial [Triticum aestivum]
15 Hb_005127_050 0.2549387702 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA2-like [Populus euphratica]
16 Hb_114310_030 0.2558514787 - - JHL18I08.8 [Jatropha curcas]
17 Hb_001369_480 0.256745122 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
18 Hb_001418_050 0.2584460744 - - PREDICTED: uncharacterized protein LOC105631088 [Jatropha curcas]
19 Hb_000418_120 0.2587961692 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
20 Hb_005215_050 0.2591045369 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]

Gene co-expression network

sample Hb_067118_010 Hb_067118_010 Hb_000313_330 Hb_000313_330 Hb_067118_010--Hb_000313_330 Hb_000375_140 Hb_000375_140 Hb_067118_010--Hb_000375_140 Hb_006061_030 Hb_006061_030 Hb_067118_010--Hb_006061_030 Hb_003713_010 Hb_003713_010 Hb_067118_010--Hb_003713_010 Hb_146255_010 Hb_146255_010 Hb_067118_010--Hb_146255_010 Hb_002374_540 Hb_002374_540 Hb_067118_010--Hb_002374_540 Hb_000313_330--Hb_000375_140 Hb_000313_330--Hb_002374_540 Hb_000313_330--Hb_003713_010 Hb_000313_330--Hb_146255_010 Hb_006663_110 Hb_006663_110 Hb_000313_330--Hb_006663_110 Hb_002164_010 Hb_002164_010 Hb_000375_140--Hb_002164_010 Hb_002774_120 Hb_002774_120 Hb_000375_140--Hb_002774_120 Hb_002003_090 Hb_002003_090 Hb_000375_140--Hb_002003_090 Hb_107658_010 Hb_107658_010 Hb_000375_140--Hb_107658_010 Hb_003536_090 Hb_003536_090 Hb_000375_140--Hb_003536_090 Hb_000313_080 Hb_000313_080 Hb_006061_030--Hb_000313_080 Hb_005614_060 Hb_005614_060 Hb_006061_030--Hb_005614_060 Hb_000049_190 Hb_000049_190 Hb_006061_030--Hb_000049_190 Hb_005665_100 Hb_005665_100 Hb_006061_030--Hb_005665_100 Hb_004899_230 Hb_004899_230 Hb_006061_030--Hb_004899_230 Hb_001568_040 Hb_001568_040 Hb_006061_030--Hb_001568_040 Hb_000500_070 Hb_000500_070 Hb_003713_010--Hb_000500_070 Hb_001232_060 Hb_001232_060 Hb_003713_010--Hb_001232_060 Hb_000815_220 Hb_000815_220 Hb_003713_010--Hb_000815_220 Hb_000160_010 Hb_000160_010 Hb_003713_010--Hb_000160_010 Hb_000139_110 Hb_000139_110 Hb_003713_010--Hb_000139_110 Hb_146255_010--Hb_000313_080 Hb_146255_010--Hb_002374_540 Hb_001887_010 Hb_001887_010 Hb_146255_010--Hb_001887_010 Hb_000392_060 Hb_000392_060 Hb_146255_010--Hb_000392_060 Hb_003685_070 Hb_003685_070 Hb_146255_010--Hb_003685_070 Hb_146255_010--Hb_006061_030 Hb_001741_110 Hb_001741_110 Hb_002374_540--Hb_001741_110 Hb_002374_540--Hb_000313_080 Hb_000087_010 Hb_000087_010 Hb_002374_540--Hb_000087_010 Hb_001396_270 Hb_001396_270 Hb_002374_540--Hb_001396_270 Hb_005357_170 Hb_005357_170 Hb_002374_540--Hb_005357_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0916563 0.0230018 0.0726448 0.3977 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0843051

CAGE analysis